PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614409.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 128aa    MW: 14816.8 Da    PI: 9.96
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.3e-32958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_013614409.1  9 KRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
                    79***********************************************8 PP
2K-box45.82.6e-1675122350
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslke 50 
                     ++++ s++e +a+++qqe+akL+++i+++q+++Rhl+G++L+ Ls+ke
  XP_013614409.1  75 NTNTHSVQEINAAYYQQESAKLRQQIQTIQNSNRHLMGDSLSALSVKE 122
                     44555599***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.034161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-34289IPR002100Transcription factor, MADS-box
CDDcd002652.05E-45275No hitNo description
PRINTSPR004041.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-985122IPR002487Transcription factor, K-box
PROSITE profilePS512976.67486128IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
NIRSTIERYK KASDNTNTHS VQEINAAYYQ QESAKLRQQI QTIQNSNRHL MGDSLSALSV  120
KEPLWYLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-22184188Myocyte-specific enhancer factor 2B
1tqe_Q1e-22184188Myocyte-specific enhancer factor 2B
1tqe_R1e-22184188Myocyte-specific enhancer factor 2B
1tqe_S1e-22184188Myocyte-specific enhancer factor 2B
6c9l_A1e-22184188Myocyte-specific enhancer factor 2B
6c9l_B1e-22184188Myocyte-specific enhancer factor 2B
6c9l_C1e-22184188Myocyte-specific enhancer factor 2B
6c9l_D1e-22184188Myocyte-specific enhancer factor 2B
6c9l_E1e-22184188Myocyte-specific enhancer factor 2B
6c9l_F1e-22184188Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517671e-130EU551767.1 Capsella bursa-pastoris SEEDSTICK-like protein (STKb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614409.14e-91PREDICTED: agamous-like MADS-box protein AGL11
SwissprotQ388362e-78AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A0D2ZSN41e-89A0A0D2ZSN4_BRAOL; Uncharacterized protein
STRINGBo00962s030.12e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.25e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]