PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614396.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 263aa MW: 28361.7 Da PI: 7.9371 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.4e-32 | 54 | 109 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + YkeClkNhAa +Ggha+DGCgEf+ps++ + +++++l+C ACgCHRnFHRre + XP_013614396.1 54 AAYKECLKNHAAGIGGHALDGCGEFIPSPTFNtSDPTSLTCDACGCHRNFHRREDD 109 68****************************99899******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-26 | 55 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-31 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.382 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.49E-16 | 166 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 169 | 230 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-24 | 174 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDVIATSATI VSHLDSQQPV TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVVAAYKECL 60 KNHAAGIGGH ALDGCGEFIP SPTFNTSDPT SLTCDACGCH RNFHRREDDL SAVSAAVPRI 120 EFRPHNRHQL PPPPLPPVGV GSQDDDDPAS PPPISSSYML LALSGGATAA PVSRKRFRTK 180 FSEFQKGKMF EFAERVGWRM PKADDVDVVE FCREIGVERS VFKVWMHNNK IPGRGGGARR 240 ANGDGGGGDG RESVPTNGSF TST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 173 | 237 | 16 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614396.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614396.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 8 | ||||
Refseq | XP_013681298.1 | 0.0 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9LXG0 | 1e-127 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A0D2ZSM4 | 0.0 | A0A0D2ZSM4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ERI0 | 0.0 | A0A3P6ERI0_BRAOL; Uncharacterized protein | ||||
STRING | Bo00958s050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-111 | homeobox protein 30 |
Publications ? help Back to Top | |||
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