PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614334.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23130.7 Da    PI: 9.8857
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++ rqvtfskRr g+lKKA+ELSvLCda+va iifs++g+ly+++s
  XP_013614334.1  9 KKIENTTSRQVTFSKRRSGLLKKAHELSVLCDAQVAAIIFSQKGRLYDFAS 59
                    68***********************************************86 PP
2K-box51.54.5e-18841711097
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +e+  + l++e+  + ++ie+L+  + +l+G+++  +sl+e +++ +q+eksl  +Rs+K +l+ +++e+l+ ke+el++e  +L+ +
  XP_013614334.1  84 TEQYVQGLKKEMVTMVEKIEMLEVHNQKLMGKSVAFCSLQEQKEIATQIEKSLHIVRSRKAKLYEDEVEKLKAKERELKDERVRLSGR 171
                     6788899****************999*******************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-31388IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-29323IPR002100Transcription factor, MADS-box
CDDcd002651.22E-39374No hitNo description
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1688170IPR002487Transcription factor, K-box
PROSITE profilePS5129710.56688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRGKIQIKK IENTTSRQVT FSKRRSGLLK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS  60
DIQKTIKRYA EYKGEYFVAE SHPTEQYVQG LKKEMVTMVE KIEMLEVHNQ KLMGKSVAFC  120
SLQEQKEIAT QIEKSLHIVR SRKAKLYEDE VEKLKAKERE LKDERVRLSG RVGEEPSGMP  180
SGSKEKEDVE TDLSIGFPKS RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-22193190MEF2C
5f28_B8e-22193190MEF2C
5f28_C8e-22193190MEF2C
5f28_D8e-22193190MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614333.11e-145PREDICTED: MADS-box protein SOC1-like
RefseqXP_013614334.11e-145PREDICTED: MADS-box protein SOC1-like
RefseqXP_013680791.11e-145MADS-box protein AGL72-like
SwissprotQ9FLH51e-116AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A3P6AG511e-137A0A3P6AG51_BRAOL; Uncharacterized protein
STRINGBra029155.1-P1e-134(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-122MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]