PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614206.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 550aa    MW: 62229.7 Da    PI: 5.9204
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.56.1e-23251308155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt++L e+F+eav+ LGG+ kA Pk +l++   m++kgLt+ +v SHLQkYRl
  XP_013614206.1 251 KTRVVWTNDLQEKFLEAVNTLGGARKANPKPLLKMledMNIKGLTRRNVCSHLQKYRL 308
                     68****************************877665559******************8 PP
2Response_reg56.81.3e-19361411106
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+v+ + + ++ +++++ k gy +v++ +d+e+al+ l  +e+ ++l++ D  mpg++G+++lk i ++  +lp++++++ +    + +a   G
  XP_013614206.1  36 VLVVEPNFVTLRKMKNLMIKYGY-QVTVYADAEAALAFLrnCEHGINLVIWDFHMPGINGIQALKIICTKM-DLPVVIMSDDDRTVSVMQATVHG 128
                     899********************.***************555555**********************8865.8********************** PP

                     ESEEEESS--HHH CS
    Response_reg  94 akdflsKpfdpee 106
                     a  +++Kp+ +e 
  XP_013614206.1 129 ACYYVMKPIRKEI 141
                     ********87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2633158IPR011006CheY-like superfamily
SMARTSM004486.0E-1834145IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.5E-2634157No hitNo description
PROSITE profilePS5011032.90635150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1636142IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.50E-1937145No hitNo description
Gene3DG3DSA:1.10.10.605.9E-21250311IPR009057Homeodomain-like
SuperFamilySSF466892.15E-12250311IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-19251308IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSEGSRTDDG DITLFKQRET SQMSSFLNEF PASANVLVVE PNFVTLRKMK NLMIKYGYQV  60
TVYADAEAAL AFLRNCEHGI NLVIWDFHMP GINGIQALKI ICTKMDLPVV IMSDDDRTVS  120
VMQATVHGAC YYVMKPIRKE IIATIWQHIV RKRMMSKSGV IPPVQLDVVQ NNDGFKENKD  180
DSMPVDQGNS EQNINMIGEK AEKKPQIGEN LPIQSDSVQN NGSDQDNNDS WTTSPYNSEQ  240
NIDGEERKQL KTRVVWTNDL QEKFLEAVNT LGGARKANPK PLLKMLEDMN IKGLTRRNVC  300
SHLQKYRLSL QGKQITQQMQ EFGWSSACTT SPLLGLNNVH TATSSLINGG ASYPVQENQY  360
QNGYMEVNKN KTASSSLMTG RATFPVQDNH YQNGYMEVNN NHAASSSLMN CRATYPVEDN  420
QYQNGYLGVN NNQVMTNTMP YDFDHDNYLQ KQKLEQQQQY QLSNQMKPEK ASNIDILKDL  480
GLAYTMPRLP YDLGHGNHLQ QEQQHQLPHQ WNNVMSNNEP EQASGNGVTG VEGTYPSLPY  540
DPNDFYSYNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614206.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614206.10.0PREDICTED: putative two-component response regulator ARR19
RefseqXP_022560240.10.0putative two-component response regulator ARR19
RefseqXP_022566338.10.0putative two-component response regulator ARR19
TrEMBLA0A3P6EJJ40.0A0A3P6EJJ4_BRAOL; Uncharacterized protein
STRINGBo00904s040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.19e-63response regulator 19