PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614125.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 341aa    MW: 39037.3 Da    PI: 4.4753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1819111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l ++d +++ + ++p + +++++ +  +s++++l+ ++g sW+vk+  +k+++ ++++ +GW++Fv++n L e++ ++F+++g+++f  +v
  XP_013614125.1  19 FFKILRREDLSSQLIRMIPHDIIRSISDD-SSSFKMVLKVPWGSSWTVKI--SKNPSFHYIEdDGWNQFVNDNALGENEYLTFTHEGNMRF--NV 108
                     99***********999**********766.5899****************..999999555549**********************99999..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  XP_013614125.1 109 NIY 111
                     665 PP
2B336.11.1e-112212981699
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l +pk f+e h+ kk+  k  +++ e   sW+v +    ++ +  +++GW++  ++ gL  gD+++Fkl++   +e++vkv r+
  XP_013614125.1 221 LGVPKVFVEMHMPKKT--KWFKIRPEGKDSWDVLF--LVTDTQSRFSAGWSRLSRELGLVIGDVCTFKLIK--PTEMLVKVSRH 298
                     679********86655..5688889999*******..555555569**********************987..77789999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2015118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1317111No hitNo description
SMARTSM010191.0E-2119114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.18319114IPR003340B3 DNA binding domain
PfamPF023624.6E-1619110IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842206299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15206298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18206298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-11207293No hitNo description
SMARTSM010192.6E-14209299IPR003340B3 DNA binding domain
PfamPF023625.7E-8220298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG  60
SSWTVKISKN PSFHYIEDDG WNQFVNDNAL GENEYLTFTH EGNMRFNVNI YEPDGTEMLK  120
PRESATIASS SGMNKREQRE GVYKHVKEEI VSSSESSYYS IKRAQGKKQE LNLGKKKAEE  180
SKKNKKSMKK KKVVDSDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMPKKTKWFK  240
IRPEGKDSWD VLFLVTDTQS RFSAGWSRLS RELGLVIGDV CTFKLIKPTE MLVKVSRHDD  300
DEDDIEEDDD NDEEEAEDAD EDDSDDEDAE DDDDDADESE D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174191KKKAEESKKNKKSMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614125.10.0PREDICTED: B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-134Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A3P6CLR20.0A0A3P6CLR2_BRAOL; Uncharacterized protein
STRINGXP_006400343.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-121VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]