PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614056.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 339aa    MW: 38372.3 Da    PI: 7.9189
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.2e-3036121184
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++
  XP_013614056.1  36 FEKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QTGTLLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNNGDTVSFHR 121
                     99*********************999**7544.46789***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-3931143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-3033121IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-2834121No hitNo description
SMARTSM010196.3E-2336145IPR003340B3 DNA binding domain
PfamPF023621.5E-2736121IPR003340B3 DNA binding domain
PROSITE profilePS5086314.07136145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSTRASTHQE PAENGASGSD NNNNNNFNSA MREPMFEKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLEDNQTG TLLDFQDKNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LNNGDTVSFH  120
RGYVPNDNEP EQRRNILFID WRNRSDTNLL HNINHHHHPI LGPPPYPTAS YYPVTEYSMP  180
HYGRFPSLYH NQFLGYGYGP YGKTVTGGRY YAGSPLDHHH RWNLGRSEPF VYDSCPVFPT  240
TSLTSSLAML PSSSPSQPPQ EGTAKKLRLF GFDVEESSSS GEARAEIGVA GHSSSSPVVI  300
RDNESSWRSP RGEMGGLSSS VVNLSDDEDY KRKGKSLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-47301442113B3 domain-containing transcription factor NGA1
5os9_B7e-47301442113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936701e-102AB493670.1 Arabidopsis thaliana At4g01500 mRNA for hypothetical protein, partial cds, clone: RAAt4g01500.
GenBankAL1614921e-102AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankBT0295201e-102BT029520.1 Arabidopsis thaliana At4g01500 mRNA, complete cds.
GenBankCP0026871e-102CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF11O41e-102AF096370.1 Arabidopsis thaliana BAC F11O4.
GenBankFJ8737341e-102FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614056.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_013614057.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-154NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A0D2ZRM90.0A0A0D2ZRM9_BRAOL; Uncharacterized protein
STRINGBo00853s090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-127B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]