PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 695aa MW: 77270.8 Da PI: 6.7636 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.2e-20 | 20 | 71 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q+++Le+ F+++++p++++r +L+k+lgL+ rq+k+WFqNrR+++k XP_013613976.1 20 HRHTPHQIHRLESSFNECQHPDEKQRLQLSKELGLSPRQIKFWFQNRRTQKK 71 679**********************************************988 PP | |||||||
2 | START | 148.5 | 6.1e-47 | 212 | 433 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddke...qWdetlakaetle 83 +a +a++el+++ + +ep+W k + +n d + f++s + + ea r sgvv+ ++++lv l+d+ + ++ +a+ +tl+ XP_013613976.1 212 IAVTAMEELLRLTQTNEPLWIKANgcrDVLNLDSYENMFPRSSGrggknhnLRKEATRSSGVVFTNAMTLVDMLMDSVKsseLFSSIIASSKTLA 306 6889**********************999999999999999988999999999*************************9999************* PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 vissg al+lm elq+lsplvp R+f ++Ry++q + g+w+iv vS + +q+ + +R+ ++pSg+li+++sng+skv wvehv+ XP_013613976.1 307 VISSGlrgnhgDALHLMLEELQVLSPLVPtREFSVLRYCQQIEHGTWAIVNVSYELPQFITH----ARSYRFPSGCLIQDLSNGYSKVSWVEHVE 397 ***********************************************************995....88888************************ PP --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++ p h++++ v+ g+a+ga +w atlqr ce+ XP_013613976.1 398 VEEQEPiHEMFKDNVREGIAFGAERWIATLQRMCER 433 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 7 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-19 | 9 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 14 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-19 | 16 | 74 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 20 | 71 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.783 | 202 | 436 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.96E-29 | 203 | 434 | No hit | No description |
CDD | cd08875 | 3.54E-94 | 206 | 432 | No hit | No description |
SMART | SM00234 | 1.1E-33 | 211 | 433 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-39 | 212 | 433 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-5 | 266 | 399 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.56E-17 | 453 | 679 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLSPRQIK 60 FWFQNRRTQK KAQHERADNC ALKEENDRIR CENIAIREAI KHAICLNCGD APLHEDSYFD 120 EQKLRIENAH LREELEKVSS VAAQFMGRPF SHLPPLLNPM HVSPLEFFHS GPSLDFDLLP 180 GSSSSSMPVP PTLPSQPNLV LSDMDKSLMT NIAVTAMEEL LRLTQTNEPL WIKANGCRDV 240 LNLDSYENMF PRSSGRGGKN HNLRKEATRS SGVVFTNAMT LVDMLMDSVK SSELFSSIIA 300 SSKTLAVISS GLRGNHGDAL HLMLEELQVL SPLVPTREFS VLRYCQQIEH GTWAIVNVSY 360 ELPQFITHAR SYRFPSGCLI QDLSNGYSKV SWVEHVEVEE QEPIHEMFKD NVREGIAFGA 420 ERWIATLQRM CERFTALLEP ATSSRDLKGV IPLPEGKQSI MRLAQRMVSN FCLSVGTSNN 480 TRTPVFSGLD AFGIRVTSYK SQHEPNGMVL CAATSFWLPV SPQNVFNYLK DERTRPQWDV 540 LLNGNSVQEV AHIANGSHPG NCISVLRGFN ASSSQNNMLI LQESCVDSSG SLVVYTPADL 600 SALNMAMTGQ DTSYIPILPS GFAVLPEGGR NNQNAEIKAE GGGGGGGSLI TVGFQIMVSS 660 LQSGKLNMES METVNNLIST TVHQIKTTLN SPSAA |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and stamen filament epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613976.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG12 | ||||
Refseq | XP_013613977.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG12 | ||||
Refseq | XP_013723367.1 | 0.0 | homeobox-leucine zipper protein HDG12-like | ||||
Refseq | XP_013723368.1 | 0.0 | homeobox-leucine zipper protein HDG12-like | ||||
Refseq | XP_022558059.1 | 0.0 | homeobox-leucine zipper protein HDG12-like | ||||
Swissprot | Q9LMT8 | 0.0 | HDG12_ARATH; Homeobox-leucine zipper protein HDG12 | ||||
TrEMBL | A0A0D2ZRE2 | 0.0 | A0A0D2ZRE2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EEE7 | 0.0 | A0A3P6EEE7_BRAOL; Uncharacterized protein | ||||
STRING | Bo00831s050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17920.1 | 0.0 | homeodomain GLABROUS 12 |
Publications ? help Back to Top | |||
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