PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613967.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 319aa    MW: 35313.4 Da    PI: 8.9392
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.77.9e-33163218258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013613967.1 163 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 218
                     9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.879161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHQMNKKDST LPYLNTSISW GVVPAEPLSM KVVDARPEHT TKQISFQDQD SSSTQSTGQS  60
YTDIASSGDD DNPSRQISFS TKSGSEETQH KGFATHPKPG SMTGLPSIHF APTQANFSFH  120
YADPQFGGLL AATYLPQAPA CNHQMVGMVP GRVPLPVEIT ETEPVFVNAK QYHAIMRRRQ  180
QRAKLEAQNK LIKARKPYLH ESRHVHALKR PRGSGGRFLN TKKLLQESEQ AAAKEQEESK  240
KANMSRFEAH MLQHSKDRSS TTSGSDITSV SDAADVFGHT EFQFSGFPIP TQTNRAILVH  300
DQSNDMHGGG DLHHFSVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20163222362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8006330.0KC800633.1 Brassica napus transcription factor subunit NF-YA3B (NF-YA3B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613932.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613936.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613943.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613950.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613954.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613958.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
RefseqXP_013613967.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D3AQ690.0A0A0D3AQ69_BRAOL; Uncharacterized protein
STRINGBo2g079060.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-167nuclear factor Y, subunit A3