PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | BES1 | ||||||||
Protein Properties | Length: 676aa MW: 76203.3 Da PI: 6.1499 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 159.1 | 2.9e-49 | 71 | 206 | 1 | 134 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ + + +++++ ++s+es+l+ XP_013613838.1 71 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQSN----HVVQFPTRSIESPLS 161 6899******************************************************************999888....999**********99 PP DUF822 96 .sslkssalas.pvesysaspksssfpspssldsislasa....a 134 s+lk++a+a+ ++++++s++ ++ +sp+slds+ +a++ + XP_013613838.1 162 sSTLKNCAKAAlECQQQHPSLRIDENLSPVSLDSVVIAESdhpgN 206 89999999876268999*******************998755550 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.3E-47 | 72 | 219 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.54E-160 | 242 | 673 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.3E-170 | 242 | 673 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 2.4E-83 | 249 | 646 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 279 | 293 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 300 | 318 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 322 | 343 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 415 | 437 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 488 | 507 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 522 | 538 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 539 | 550 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 557 | 580 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.5E-55 | 595 | 617 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MHTINTTTGS QDPIDPNRNL DPDQYPHRNP SHTQSRRPRG FAATAAAASM GQADSDVNNG 60 NITGETSSGG GGKGKREREK EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV 120 IAALAREAGW SVDADGTTYR QSHQSNHVVQ FPTRSIESPL SSSTLKNCAK AALECQQQHP 180 SLRIDENLSP VSLDSVVIAE SDHPGNGRYT GASPIPSVGC VDANQLIQDV HSTERRNDYT 240 ENFYVPVYAM LPVGVIDNFG QLVDPQGVRQ ELSYMKSLNV DGVVIDCWWG IVEGWNPQKY 300 VWSGYRELFN LIRDFKLKLQ VVMAFHEYGG NASGNVMISL PQWVLEIGKD NPDIFFTDRE 360 GRRSFECMNW SIDKERVLHG RTGIEVYFDF MRSFRSDFDD LFVEGMIAAI EIGLGASGEL 420 KYPSFPERMG WIYPGIGEFQ CYDKYSQTSL LKEAKARGFA FWGKGPENAG QYNSQPHETG 480 FFQERGEYDS YYGRFFLNWY SQLLIGHAEN VLSLANLAFE ETKIIVKIPA IYWSYKTASH 540 AAELTAGYYN PSNRDGYSPV FETLKKYSVT VKFVCPGPQM SSNEHEEALA DPEGLSWQVV 600 NAAWDKGLLI GGENAITCFD REGCMRLIEM AKPRNHPDSY HFSFFTYRQP SPLVQGSTCF 660 ADLDYFIKRM HGDLQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-120 | 244 | 673 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117140 | 0.0 | AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16. | |||
GenBank | BT006482 | 0.0 | BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613838.1 | 0.0 | PREDICTED: beta-amylase 8 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A0D3AUA1 | 0.0 | A0A0D3AUA1_BRAOL; Beta-amylase | ||||
STRING | Bo2g127050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10888 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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