PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613634.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 275aa    MW: 31145 Da    PI: 6.9718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20105155256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a++k++ge
  XP_013613634.1 105 LYRGVRQRH-WGKWVAEIRLPKT---RTRLWLGTFETAEDAALAYDEAARKIRGE 155
                     59******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-35104164No hitNo description
SMARTSM003804.1E-38105168IPR001471AP2/ERF domain
PROSITE profilePS5103222.866105162IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22105163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-33105163IPR001471AP2/ERF domain
PfamPF008472.5E-13106155IPR001471AP2/ERF domain
PRINTSPR003675.5E-11106117IPR001471AP2/ERF domain
PRINTSPR003675.5E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEVALNMNGY TEEFMQALES FMKVTTSSSS SSPSSSKQEP LAPNNQSGPI GLNQLTPTQI  60
LQIQRELHLR QNQAHRRGDS AHNLHLLNAK PVLMKKTDVT TPVKLYRGVR QRHWGKWVAE  120
IRLPKTRTRL WLGTFETAED AALAYDEAAR KIRGENARLN FPNNGEYRQT LSPTVNAKIE  180
SIFNTSDLPM HELKKPAKTE EGFIGFHYTG HKPDQEREIP DIFGYGSGSS PESNITLLNF  240
SSEWIKEDQS FCIGLQKYPS LEIDWEAIDK LSESV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21104166470ATERF1
3gcc_A3e-21104166470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613634.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-119ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A0D2ZQ540.0A0A0D2ZQ54_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DKG60.0A0A3P6DKG6_BRAOL; Uncharacterized protein
STRINGBo00615s260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-112ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]