PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613617.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 382aa    MW: 43567.4 Da    PI: 7.7442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-1196128335
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                     ++k +rr+++NReAAr+sR+RKka++++Le+  
  XP_013613617.1  96 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 128
                     6899*************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-694157IPR004827Basic-leucine zipper domain
PfamPF001705.7E-996126IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.63496138IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-798132No hitNo description
CDDcd147083.12E-2198149No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-799139No hitNo description
PROSITE patternPS000360101116IPR004827Basic-leucine zipper domain
PfamPF141441.2E-28185259IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MISFGVLQVE GSMNSTSTHF VPPRRVGIYE PLHQFGMWGE TFKNNIGNGE DMNTPSHIII  60
PNNQKLDDNN LSEDTSQGTG GTPHMFDQEA STSRHPDKIQ RRLAQNREAA RKSRLRKKAY  120
VQQLETSRLK LIHLEQELDR ARQQGFYVGN GIDTNSLSFS EPMNPGIATF EMEYGHWIQE  180
QNKQICKLRT VLQGQVSDVE LRLLVENGMK HYFDLFRMKS AAAKADVFFV MSGMWRTSAE  240
RFFLWIGGFR PSDLLKVLLP HFDVMTDQQI LDVCNLRQSC QQAEDALSQG MEKLQHTLAD  300
CVAGGRLGEG SYIPQVNSAM ERLEALVSFV NQADHLRHET LQQMHRILTT RQAARGLLAL  360
GEYFQRLRAL SSSWATRHRE LT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613617.10.0PREDICTED: transcription factor TGA1-like isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D2ZQ470.0A0A0D2ZQ47_BRAOL; Uncharacterized protein
STRINGBo00615s190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]