PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 342aa MW: 39314.7 Da PI: 9.9229 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.6 | 1.6e-23 | 6 | 55 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s + +++s+R+++i+KKA+ELS+LC++ v vi+++++g+l+++++ XP_013613614.1 6 SSSSNSLAATSLSNRLKTIFKKASELSILCQVAVNVIYYGPNGELKTWPK 55 78999*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0024 | 4 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-13 | 15 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-13 | 15 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.316 | 15 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MRASSSSSSN SLAATSLSNR LKTIFKKASE LSILCQVAVN VIYYGPNGEL KTWPKEKEVV 60 KDMALRYKAA TKRKKSSNLR DFLEGKLEND KNLKKNKKKT KREFENVKYP EWYPVLDHYS 120 PDQLHELVLS LQGTLSTMEE RIRVLEAKKQ KNTNLVHQNL TQQRHHQHQT VQPLNPSQYS 180 LYLFNRDDAT LSQLPLSASH SKQLISYQNQ LRMQQQRLYD PCVSNTQGHP ALLTVQESWL 240 KNQLMQQQEP YGSHHNMRTM NNTTNSKVLG HPCPLNTIPK EFSFDLQKNP NDDMVGRPKF 300 SQDMLNLCLA YADSPQLQTS SLPSIHQTIP NINLIPDNSR CL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 101 | KKNKKKTKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613614.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613614.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
TrEMBL | A0A0D2ZQ37 | 0.0 | A0A0D2ZQ37_BRAOL; Uncharacterized protein | ||||
STRING | Bo00615s090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65330.1 | 2e-84 | AGAMOUS-like 78 |