PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 254aa MW: 27907.3 Da PI: 6.6715 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.4 | 2.6e-31 | 66 | 119 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++r++eClkN+A+++GghavDGCgE+mp+ g egt++alkCaACgCHRnFHR+e XP_013613610.1 66 RFRFRECLKNQAVNIGGHAVDGCGEYMPA-GIEGTIEALKCAACGCHRNFHRKEL 119 689*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.8E-28 | 67 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-28 | 68 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.958 | 69 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-24 | 71 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 163 | 234 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-17 | 166 | 233 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-26 | 175 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDFEEEINLH EEEEEGDALY DSPPLPPPSR VLKASTESPD TAGTTSTGEG GYMVAHGGSS 60 LGGGGRFRFR ECLKNQAVNI GGHAVDGCGE YMPAGIEGTI EALKCAACGC HRNFHRKELP 120 YFHHLAPPTP PGAYRLPAPM SYRPSPSQAS PVQLALPPPA EDRMETSSAE AGGMRKRFRT 180 KFTAEQKERM LGLAERIGWR IQRQDDEVIQ RFCQETGVPR QVLKVWLHNN KHTRGMSSSS 240 PLDQHQNPTL PPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-34 | 174 | 233 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00588 | DAP | Transfer from AT5G65410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240937 | 0.0 | AC240937.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF101J16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613610.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 1-like isoform X3 | ||||
Swissprot | Q9FKP8 | 1e-109 | ZHD1_ARATH; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0D2ZQ32 | 0.0 | A0A0D2ZQ32_BRAOL; Uncharacterized protein | ||||
STRING | Bo00615s040.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65410.1 | 2e-96 | homeobox protein 25 |
Publications ? help Back to Top | |||
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