PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 336aa MW: 37027.2 Da PI: 5.4999 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 5.9e-19 | 248 | 282 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l XP_013613588.1 248 CSHCGVQKTPQWRAGPKGAKTLCNACGVRYKSGRL 282 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.8E-98 | 15 | 336 | IPR016679 | Transcription factor, GATA, plant |
SuperFamily | SSF57716 | 3.56E-14 | 240 | 304 | No hit | No description |
SMART | SM00401 | 5.2E-16 | 242 | 296 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.189 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.1E-15 | 246 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.51E-14 | 247 | 295 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.4E-17 | 248 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MERMEAGLKS SIRQEMALKT TPPVYEEFLA VTAAQNDFSS EDFSVDDLLD LSNDDVFVEE 60 EEAAEPKAQQ EVLPCVSSEQ PNDVEEVLPP GNEFGSLPSN QLPVPMDELA DLEWLSHFVD 120 DSFTEYSAPN LTGTPAEKPA WLTGDRKHPV TPASEESCFK SPLPAKARSR RYRNGLKAWS 180 LGSSGPSSSS STSSSSSSSG LSSQWFSGAE LLEPDFSSEK LPVPKKYKKR SAESVFSAKL 240 QQQPQRRCSH CGVQKTPQWR AGPKGAKTLC NACGVRYKSG RLLPEYRPAC SPTFSSELHS 300 NHHRKVIEMR RKKEPTDDNT TGLNQPVKTP QAVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613588.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189415 | 0.0 | AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613588.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Refseq | XP_013641396.1 | 0.0 | GATA transcription factor 5-like | ||||
Refseq | XP_022550469.1 | 0.0 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 1e-159 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A0D3A670 | 0.0 | A0A0D3A670_BRAOL; GATA transcription factor | ||||
STRING | Bo1g039780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-150 | GATA transcription factor 5 |