PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013613269.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 390aa MW: 42622.8 Da PI: 4.8333

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013613269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.4	6.1e-35	107	209	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgk....spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 lfqrlw++eDei lL+G++d+ + ++g+ s++ d+ fye +k+++ +++sk+qlveK+rrLKkK+++ ++k+ sgk++ f+++hdq +f+ XP_013613269.1 107 LFQRLWTDEDEIELLRGFLDYvTCHRGSssssSSHPpDTAPFYELIKSKLRVEFSKNQLVEKLRRLKKKYRNVMSKIGSGKDVFFKSPHDQATFD 201 79*****************7778998766444558****************************************************** PP DUF573 91 lskkiWgs 98 +s+kiW++ XP_013613269.1 202 ISRKIWNQ 209 ****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.4E-32	108	208	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MASDERDAVE SPELEEDGSA GGGGIAGESD SDDDQQLMPE PDVAAADLNS PLLSATAEDT 60 VTVAIPSGST LPAAAFPVDS DPKRRRATEI VVHLRPPPPP IDDSRRLFQR LWTDEDEIEL 120 LRGFLDYVTC HRGSSSSSSS HPPDTAPFYE LIKSKLRVEF SKNQLVEKLR RLKKKYRNVM 180 SKIGSGKDVF FKSPHDQATF DISRKIWNQT GKIIGFEDNN VIDLEEQPSS TNVDVDSDNV 240 LEKKVAVSRK RSRSRIGRID EDNKPISLSD GPTASGAGAN ENVAAFGEFS DGRSLGGLIE 300 ETVKSCVSPL IKEMMNGATG MMMAAVGVYP GGGGGHGMGV LSPMLMPNLG DERWRRQQIL 360 ELEVYSRRLE LVQEQIRATL HELKTMPSGR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MASDERDAVE SPELEEDGSA GGGGIAGESD SDDDQQLMPE PDVAAADLNS PLLSATAEDT  60
VTVAIPSGST LPAAAFPVDS DPKRRRATEI VVHLRPPPPP IDDSRRLFQR LWTDEDEIEL  120
LRGFLDYVTC HRGSSSSSSS HPPDTAPFYE LIKSKLRVEF SKNQLVEKLR RLKKKYRNVM  180
SKIGSGKDVF FKSPHDQATF DISRKIWNQT GKIIGFEDNN VIDLEEQPSS TNVDVDSDNV  240
LEKKVAVSRK RSRSRIGRID EDNKPISLSD GPTASGAGAN ENVAAFGEFS DGRSLGGLIE  300
ETVKSCVSPL IKEMMNGATG MMMAAVGVYP GGGGGHGMGV LSPMLMPNLG DERWRRQQIL  360
ELEVYSRRLE LVQEQIRATL HELKTMPSGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	254	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013613269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613269.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	F4K5T4	1e-178	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A3P6DAB4	0.0	A0A3P6DAB4_BRAOL; Uncharacterized protein
STRING	AT5G28040.1	1e-177	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-142	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]