PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613261.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 380aa    MW: 42131.8 Da    PI: 4.887
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.73.5e-38155243297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqrlw+eeDei++LqG+idfk++tgksp+dd++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk++ l++ iW
  XP_013613261.1 155 AFQRLWTEEDEIAVLQGMIDFKKDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRLCQYIW 242
                     69***************************************************************99876.......****************** PP

          DUF573  97 g 97 
                     g
  XP_013613261.1 243 G 243
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-30156243IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSKKRNPLED PPAASSSDEE EVESSAEEEE EEDDNSSSEE EEEDDDPKPP PSSSAVTIAV  60
PGKPTATLPA DSESGSETET DSESEPEQPT NKGSGKAVLT AKKDKDAPPP PPVALALPAK  120
SGAKRPSTEG PSKETNSKRV KKDEEKREDS KKPAAFQRLW TEEDEIAVLQ GMIDFKKDTG  180
KSPYDDTNVY YDYIKKSISF EVSKNQFMDK IRSLRKKYIG KEKPSFTKPH DQKSYRLCQY  240
IWGPDGMGLE SAVKSNGASK KSQKKTKKLD SVKQELSFGA SPNGKTVDDD ENDVEVAVAA  300
KKHDWFDNSF LVQGIAGFGV DEHHVKQRWS LVPVETKKKV EEKLKLLQAK EIEFVLQKTE  360
VLHQVTTMIA EASKNKPLDI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.106360.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613261.10.0PREDICTED: mediator-associated protein 1-like
SwissprotQ9SYA91e-129STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A0D3E5070.0A0A0D3E507_BRAOL; Uncharacterized protein
STRINGBo9g040950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-78DNA-binding storekeeper protein-related transcriptional regulator