PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013613030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 499aa MW: 54098.2 Da PI: 9.5813 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.5e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k F r nL+ H r H XP_013613030.1 83 FICDVCKKGFQREQNLQLHRRGH 105 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 159 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_013613030.1 159 WKCDKCSKRYAVQSDWKAHSKTC 181 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.48E-7 | 82 | 105 | No hit | No description |
Pfam | PF13912 | 9.8E-5 | 82 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-5 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 124 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 147 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.48E-7 | 154 | 179 | No hit | No description |
SMART | SM00355 | 140 | 159 | 179 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MASSSYNASV VPSSSSSAQP FFLTGSGVGE NDFGQKDTFV SMIQQPNSSA PLPKKRRNQP 60 GNPNPDAEVV ALSPKTIMAT NRFICDVCKK GFQREQNLQL HRRGHNLPWK LKQKSTKEVK 120 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CDKCSKRYAV QSDWKAHSKT 180 CGTKEYRCDC GTIFSRRDSY ITHRAFCDAL IQETARNPTL SFTSMEAASS GAGSGGLYGR 240 LDGGRTLSHH HLSGHPNSGF SPLAGYNLNI ASSENSRHFV PQTSNPNFLI QSSQGMLTVP 300 NNNDQSFMNH QGLNQFDPVN NINSKSSTNN SFFNLGFFQE NIKNSETSLP SLYSSDVLVH 360 RPEESLNVGS NVSATALLQK ATQMGSITSN DPSALLRGLA SSSSNDFGGG QIMGNDNNGN 420 LQGLMNSLVA VNGGGAGGSG CNIFDVHFGN NGNMSGSDKL TLDFLGVGGM VRNVNRGRGR 480 GGDVGELKFS EQNHPFGRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-34 | 155 | 221 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 8e-34 | 155 | 221 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013613030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117733 | 0.0 | AK117733.1 Arabidopsis thaliana At2g02080 mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL17-41-L01. | |||
GenBank | BT005897 | 0.0 | BT005897.1 Arabidopsis thaliana At2g02080 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013613030.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_013613031.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q8GYC1 | 0.0 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A0D3E7J1 | 0.0 | A0A0D3E7J1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g071570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3678 | 17 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 0.0 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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