PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613001.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 151aa    MW: 16907.7 Da    PI: 8.5871
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-085881326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++lC++f  + +C++Gd+C++ H+
  XP_013613001.1 58 RVLCNRFVSSNFCPFGDSCRYLHP 81
                    78*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.09E-12443No hitNo description
PfamPF062202.3E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.9765583IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-45682IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65782IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-75881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-66080IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS STTTSDVNNQ QVSSFASRVL  60
CNRFVSSNFC PFGDSCRYLH PNNIPGNTGY TNNNSNTQLL AGLPNQHIQG SSLNRDCFSG  120
RAGGTGWFDL PPSLRPPPEQ GYPQLPSIDW G
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613001.11e-110PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP112e-35C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A078G4X21e-101A0A078G4X2_BRANA; BnaA09g04110D protein
STRINGXP_006394904.12e-80(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-76C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]