PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 822aa MW: 91558.7 Da PI: 5.8605 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.4e-29 | 547 | 597 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_013612987.1 547 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 597 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.45 | 536 | 617 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.7E-26 | 549 | 597 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.64E-20 | 717 | 807 | No hit | No description |
PROSITE profile | PS51745 | 19.789 | 718 | 804 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.0E-23 | 718 | 804 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.2E-17 | 719 | 803 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.81E-33 | 719 | 803 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.0E-25 | 719 | 804 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MELDDLDLGS SWPLDQISFA SSSFRFPSSD QPFSPLWSFS SADGGAELCS APTLLTDYSL 60 LLASSESETA ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA 120 QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF 180 RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN 240 YAPEVEKVCK ALEAVNLKTS EILNHESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT 300 WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ 360 KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL 420 EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEEGMVYS 480 KREPIQISIS KDYLEINAPE EKLRLNPDLV VENNDVANGF ERFRTFNPSA EEAKTEKKTE 540 RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS 600 LTRLKHVIDS VQGADGSINL TSLSPRPWQV SQPPPPPTTG SPTNYIKLEN RDAEDSAGSS 660 TSRASCKVSP ISETRFRLLT QNQEAFKQTA FDESDSTSKN IANFWTSQDT TTLLLFKLVS 720 IKATYREDII RFKISPESIS IAELKEQVAK RLKLETGAFE LKYLDDDKEW VSVSCDADLS 780 ECLDTSSVVT AAKANTLRLS VHDVTPNFGS SCESSEETMM CL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612987.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612987.1 | 0.0 | PREDICTED: protein NLP6 | ||||
Refseq | XP_013644779.1 | 0.0 | protein NLP6 | ||||
Swissprot | Q8RWY4 | 0.0 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | A0A078J6C8 | 0.0 | A0A078J6C8_BRANA; BnaCnng38990D protein | ||||
TrEMBL | A0A0D3E483 | 0.0 | A0A0D3E483_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DZK5 | 0.0 | A0A3P6DZK5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g032270.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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