PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612908.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 356aa    MW: 39186.9 Da    PI: 6.7625
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612908.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box253.9e-082058440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                    r C+ +++  +  fC+ ++ +lC +C + +H++  H++v
  XP_013612908.1 20 RFCDACQSVSAAVFCRVDSAFLCLTCDTRIHSYtrHERV 58
                    78******99*********************87889876 PP
2zf-B_box26.71.2e-0859103442
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  XP_013612908.1  59 FLCEVCEQAPAAVTCKADAASLCVTCDSDIHSAnplasrHERVPV 103
                     68*****************************66999999999986 PP
3CCT706.1e-24288331144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  XP_013612908.1 288 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 331
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0821760IPR000315B-box-type zinc finger
SMARTSM003361.4E-71760IPR000315B-box-type zinc finger
CDDcd000212.76E-82060No hitNo description
PfamPF006431.8E-62058IPR000315B-box-type zinc finger
PROSITE profilePS5011910.66556103IPR000315B-box-type zinc finger
CDDcd000213.49E-859103No hitNo description
PfamPF006432.1E-659103IPR000315B-box-type zinc finger
SMARTSM003365.9E-1061103IPR000315B-box-type zinc finger
PfamPF062035.5E-18288330IPR010402CCT domain
PROSITE profilePS5101716.817288330IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGFGLENIKS ISGGWGAAVR FCDACQSVSA AVFCRVDSAF LCLTCDTRIH SYTRHERVFL  60
CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER VPVESFFDSA ETAVAKISAS  120
TFGVLGSSAT VDLTAVPVMG NSDELGLCPW LLPNDFSEPA KPEMKSSEFM FSDFDRLIDF  180
EYPNSFNHQQ PHNNAGADSL VPVQTKTEPL PLSKNDHCFD IDFCRSKLSA FTYPTQSISH  240
SVSTSSLEYG VVPDRNTSSE ISIPFNRSTT TITASTATTG DQASSMNREA RVLRYREKRK  300
NRKFEKTIRY ASRKAYAESR PRIKGRFAKR TETENDNVFS SHVYASAAQY GVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612908.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894790.0AC189479.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB081M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612908.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0D3EC700.0A0A0D3EC70_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E3030.0A0A3P6E303_BRAOL; Uncharacterized protein
STRINGBo9g133400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]