PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 797aa MW: 89127.6 Da PI: 6.8453 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.2 | 1.8e-36 | 136 | 212 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yhrrh+vC +++a+ v+++g+ +r+CqqC++fh l +fDe+krsCrr+L++hn+rr++k XP_013612712.1 136 RCQVPGCEVDISELKGYHRRHRVCLRCANASFVVIDGEDKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRKRKP 212 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-28 | 130 | 198 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.692 | 134 | 211 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-34 | 135 | 215 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-27 | 137 | 210 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MSSLSQSPSP PEMEIQPPAL LDDDPSTYSS SALWDWGDLL DFAADERLLV SLDSDQTPFS 60 PVPPPPMIPT QSETYPSPDE SGGSGSDRVR KRDPRLLCSN FVEGLLPCSC PELDQKLEEA 120 ELPKKKRVRG GSGVARCQVP GCEVDISELK GYHRRHRVCL RCANASFVVI DGEDKRYCQQ 180 CGKFHVLPDF DEGKRSCRRK LERHNNRRKR KPVDKGGVAS EQQQVLSQND NSVIDVDDGK 240 ADNTCSSDQR VEQEVSLNFE DRHIPTQGSV PFTHSINADN FVSGTCSGEA QPDEGINDTK 300 FELSPSGGDN KSAYSTMCPT GRISFKLYDW NPAEFPRRLR HQIFQWLATM PVELEGYIRP 360 GCTILTVFIA MPEITWAKLS KDPVAYLDEF ILKPGKMLFG RGSMTVYLNN MIFRLIKGGT 420 TLRRVDVKLE SPKLQFVYPT CFEAGKPIEL VVCGLNLVQP KCRFLVSFSG KYLPHNYSVV 480 PALGQDGKRS CNNKLYRIKI VNSEPNLFGP AFVEVENESG LSNFIPLIIG DKAICSEMKV 540 IEQKFNATLF PEEQDITACC SMTCCCKDFK ERQSTFTGLL LDIAWSVKVP ASECTEQTVN 600 RCQIKRYNRV LNYLIHSNSP SILGNVLHNL ETLVKKMEPD SFVHCTCDCD VRLLHENMNT 660 ARKQQSHVDS KVNPVTSVCC CESSFQKDIS SRVPNFNQEP EAGVGCDERI QAASPDTGRK 720 ETDPLLNKEV VMTVNDIGDW PRKSCIPIQS AQTFRSRQTV LFIATIAVCF AVCAVLYHPN 780 KVTQLAVSIR TRLAHKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-49 | 134 | 219 | 3 | 88 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612712.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353552 | 0.0 | AK353552.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612712.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A3N6PYF5 | 0.0 | A0A3N6PYF5_BRACR; Uncharacterized protein | ||||
STRING | Bo9g154530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |