PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612520.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 495aa    MW: 55281.3 Da    PI: 6.5827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-163165135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013612520.1 31 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 65
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-122469No hitNo description
SMARTSM004014.1E-92579IPR000679Zinc finger, GATA-type
CDDcd002021.03E-153078No hitNo description
PROSITE profilePS5011411.23164IPR000679Zinc finger, GATA-type
PfamPF003205.7E-143165IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-123164IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.3E-8258355IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
METVGIFCRS LFHASWTLLQ IKEEMGKQGP CYHCGVTSTP LWRNGPPEKP VLCNACGSRW  60
RTKGSLVNYT PVRARAEGDE VEIDDRRGGQ KMMMINGMSM NKKRKPYQEN FTVKRTNLEF  120
SNGFKKRSLE EEASNNRSSS GSVVSNSESC DQSNVWETSF AACKKRTCVG RPKAASSSVE  180
KLTKDLFSIL QEQQFSCCVS GISEEELLFE NESPMVIGHG SVLLRDPHED SEASSLLVEN  240
SKSSSIHSQN SGGKAIKQEQ LKRTKSQVLG RHSLPLCNID LKDVINFDEF IEKFTKGEQQ  300
KLMKLLPEVD SVDPPHSLMS MFESSQFKEN FSLFQQLVAD GVFGTSTSSS GSKLEEFKTL  360
AKLALSDPDK SHMLESYQML KGQRKGIEDS SRVSNQTPSD NNRLVTIERP CESLNQNFSE  420
TRVVTKSPKE VMKIRSKHIE TKEIIENSVS SLNHMSYGGS MVCGGYEDND NSDQDLLLDV  480
PSNGSFPQAE LLHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612520.10.0PREDICTED: GATA transcription factor 27-like isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3AUX00.0A0A0D3AUX0_BRAOL; Uncharacterized protein
STRINGBo2g132210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27