PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 495aa MW: 55281.3 Da PI: 6.5827 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.3 | 3.3e-16 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_013612520.1 31 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 65 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.7E-12 | 24 | 69 | No hit | No description |
SMART | SM00401 | 4.1E-9 | 25 | 79 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.03E-15 | 30 | 78 | No hit | No description |
PROSITE profile | PS50114 | 11.2 | 31 | 64 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.7E-14 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-12 | 31 | 64 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 4.3E-8 | 258 | 355 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
METVGIFCRS LFHASWTLLQ IKEEMGKQGP CYHCGVTSTP LWRNGPPEKP VLCNACGSRW 60 RTKGSLVNYT PVRARAEGDE VEIDDRRGGQ KMMMINGMSM NKKRKPYQEN FTVKRTNLEF 120 SNGFKKRSLE EEASNNRSSS GSVVSNSESC DQSNVWETSF AACKKRTCVG RPKAASSSVE 180 KLTKDLFSIL QEQQFSCCVS GISEEELLFE NESPMVIGHG SVLLRDPHED SEASSLLVEN 240 SKSSSIHSQN SGGKAIKQEQ LKRTKSQVLG RHSLPLCNID LKDVINFDEF IEKFTKGEQQ 300 KLMKLLPEVD SVDPPHSLMS MFESSQFKEN FSLFQQLVAD GVFGTSTSSS GSKLEEFKTL 360 AKLALSDPDK SHMLESYQML KGQRKGIEDS SRVSNQTPSD NNRLVTIERP CESLNQNFSE 420 TRVVTKSPKE VMKIRSKHIE TKEIIENSVS SLNHMSYGGS MVCGGYEDND NSDQDLLLDV 480 PSNGSFPQAE LLHMI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183495 | 0.0 | AC183495.1 Brassica oleracea Contig A, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612520.1 | 0.0 | PREDICTED: GATA transcription factor 27-like isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | A0A0D3AUX0 | 0.0 | A0A0D3AUX0_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g132210.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |