PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612479.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 618aa    MW: 66646.7 Da    PI: 5.2061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.3e-1122396182374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++       ++ p++e      +e++ +++l++e+sP++k++++
  XP_013612479.1 239 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP----AESSAPATEL---YGKEHIISTQLLYELSPCFKLGFM 326
                     6889*************************************************9....3333344444...49********************** PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpfef 178
                     +aN aIl+a  ++    +  H+iDf+i++G+Q+++Ll+aL++R+ ++ p  +RiT+v + + g        +e+l+++g+rL+++ ++lg++++f
  XP_013612479.1 327 AANLAILDASGNNnddgTSFHVIDFEIGEGGQYVNLLHALSTRRsGKNPlVVRITAVTNISDGfsvaghrGEERLKTIGDRLSELSDRLGISLKF 421
                     **********9998887889*********************9985444459********9988999999999*********************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     nv+++ rl+dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P vv++ve+e++ n+++Fl r++e++ +y al+ds+e+
  XP_013612479.1 422 NVVACLRLSDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSESCACYGALLDSVES 516
                     **9999***************************************************************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrp 366
                     ++p+ +++r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ +    g++v+ee+g +++gW++r+
  XP_013612479.1 517 TVPSSNSDRAKVEEG-IGRKLINAVACEGIDRVERCEVFGKWRMRMSMAGFELMPLSEKIAESIKSRLSNGNrvHPGFTVKEENGGVCFGWMGRT 610
                     ***************.**************************************************9998777789******************* PP

            GRAS 367 LvsvSaWr 374
                     L ++SaWr
  XP_013612479.1 611 LAVASAWR 618
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.227212596IPR005202Transcription factor GRAS
PfamPF035143.2E-109239618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MASGFPGGGG GPEFYGVGGR SMPGGPMNSG NNNPQIPGIF LDQIGNRISS GNGIAGKRNL  60
ADFQAAQQQP QQSFHNQAAI NAFLLRSVKP RTFQNLQSPA IDMSSFGGSS QRYGSPSFLP  120
NLRFQTQQQP DYTGIRMGIG SGNQTLSGVP CIEPVQNLNR AEESENMLNS LRELEKQLLD  180
DDDAQGGDDD VSVITHSNSD WLHGLVTPNP NPVLSSSPTS SSSSSSPSTA STTTSVCSRQ  240
TVLEIATAIA EGKTEIASEI LARVSQTPSQ RRNSEEKLVD FMVTALRSRI NPAESSAPAT  300
ELYGKEHIIS TQLLYELSPC FKLGFMAANL AILDASGNNN DDGTSFHVID FEIGEGGQYV  360
NLLHALSTRR SGKNPLVVRI TAVTNISDGF SVAGHRGEER LKTIGDRLSE LSDRLGISLK  420
FNVVACLRLS DLSRESLGCD PDEPLAVNLA FKLYRVPDES VCMENPRDEL LRRVKGLNPS  480
VVTLVEEEMN SNTAPFLGRV SESCACYGAL LDSVESTVPS SNSDRAKVEE GIGRKLINAV  540
ACEGIDRVER CEVFGKWRMR MSMAGFELMP LSEKIAESIK SRLSNGNRVH PGFTVKEENG  600
GVCFGWMGRT LAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3723761811375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612479.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D3E8K50.0A0A0D3E8K5_BRAOL; Uncharacterized protein
STRINGBo9g083130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8