PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612299.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 791aa    MW: 86540.5 Da    PI: 6.0523
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-21124179156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_013612299.1 124 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 179
                     688999***********************************************999 PP
2START206.31.2e-643115311206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     ela++a++el+k+a+++ep+Wvks     +++n +e++++f+++k     +ea+r+sg+v+ ++  lve+l+d+  +W+e+++    + +t++vi
  XP_013612299.1 311 ELALTAMDELLKLAQSDEPLWVKSLdgerDELNHEEYMRTFSSTKPngLVTEASRTSGMVIINSLSLVETLMDSD-RWTEMFPcivaRSTTTDVI 404
                     5899*************************************99999999**************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdl 172
                     s g      ga+qlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s  v+R  +lpSg++++++sng+skvtwveh+++
  XP_013612299.1 405 SGGmagtrnGAIQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSTVVIR--RLPSGCVVQDMSNGYSKVTWVEHAEY 497
                     ***********************************************************76666666..************************** PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++h l+r+l++sgl +g ++wvatlqrqce+
  XP_013612299.1 498 DENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 531
                     ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-22111181IPR009057Homeodomain-like
SuperFamilySSF466891.2E-20111181IPR009057Homeodomain-like
PROSITE profilePS5007117.281121181IPR001356Homeobox domain
SMARTSM003899.9E-18122185IPR001356Homeobox domain
CDDcd000861.46E-18124181No hitNo description
PfamPF000462.0E-18124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084844.819302534IPR002913START domain
CDDcd088751.30E-115306530No hitNo description
SuperFamilySSF559611.92E-31306531No hitNo description
PfamPF018529.4E-58311531IPR002913START domain
SMARTSM002343.2E-41311531IPR002913START domain
SuperFamilySSF559611.24E-21551764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MNFGSLFDNT TGGVPTGLAY GNHTTATTVI PGGAMSHIAA ASLFSPPINT KSIYSSSGLS  60
LTLEQPERGT SMRNNNGAGG DIFDGSGKNR RSREEEHESR SGSDNVEGIS GEDQDADDNK  120
PPKKKRYHRH TPQQIQELES MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT  180
QLERHENALL RQENDKLRAE NMSIREAMRN PTCNICGGPA MLGDVSIEEH HLRIENARLK  240
DELDRVFNLT GKFLGHHHNN HTSSLELGVG TNNNGGNFAF PPDFNGGGGC LPPPQQATVI  300
NGVDQRSVLL ELALTAMDEL LKLAQSDEPL WVKSLDGERD ELNHEEYMRT FSSTKPNGLV  360
TEASRTSGMV IINSLSLVET LMDSDRWTEM FPCIVARSTT TDVISGGMAG TRNGAIQLMN  420
AELQVLSPLV PVRNVNFLRF CKQHAEGVWA VVDVSIDTVR ENSGGSTVVI RRLPSGCVVQ  480
DMSNGYSKVT WVEHAEYDEN QIHHLYRPLL RSGLGFGSQR WVATLQRQCE CLAILMSSSV  540
TSHDDTSISP GGRKSMLKLA QRMTINFCSG ISAPSVHSWS KLTVGNVDPD VRIMTRKSVD  600
DPSEAPGIVL SAATSVWLPA SPQRLFDFLR NERMRCEWDI LSNGGPMQEM AHIAKGQDQG  660
NSVSLLRSNP MNANQSSMLI LQETCIDASG ALVVYAPVDI PAMHVVMNGG DSSYVALLPS  720
GFAVLPDGGF DGVSGDGEQR PVGGGSLLTV AFQILVNNLP TAKLTVESVE TVNSLISCTV  780
QKIRTALQCE N
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.22356e-86leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612299.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D3DZP00.0A0A0D3DZP0_BRAOL; Uncharacterized protein
STRINGBo9g002480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]