PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YB | ||||||||
Protein Properties | Length: 166aa MW: 18443.6 Da PI: 4.2836 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 79 | 6.4e-25 | 11 | 99 | 3 | 91 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ + +++r XP_013612244.1 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHR 99 6899***************************************************************************9976554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-40 | 8 | 139 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-35 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.7E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHRY ETMQDSQRSV KMNSGAEMTE 120 EEAAAEQQRM FAEARARMNG GGGGGVSVPQ PDQEQQLDTQ QSNPQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 9e-35 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612244.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF428400 | 1e-141 | AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds. | |||
GenBank | AK227164 | 1e-141 | AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07. | |||
GenBank | AY087017 | 1e-141 | AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence. | |||
GenBank | AY125544 | 1e-141 | AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600317.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013600318.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013612243.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013612244.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013612245.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013612247.1 | 1e-121 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_013730175.1 | 1e-121 | protein Dr1 homolog | ||||
Refseq | XP_013730182.1 | 1e-121 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-101 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A078G509 | 1e-120 | A0A078G509_BRANA; BnaC09g47720D protein | ||||
TrEMBL | A0A0D3EGX4 | 1e-120 | A0A0D3EGX4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ET17 | 1e-120 | A0A3P6ET17_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g004650.1 | 1e-120 | (Brassica oleracea) | ||||
STRING | Bo9g174680.1 | 1e-120 | (Brassica oleracea) | ||||
STRING | Bo9g174690.1 | 1e-120 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08190.1 | 3e-73 | nuclear factor Y, subunit B12 |
Publications ? help Back to Top | |||
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