PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013612101.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 239aa MW: 26091.2 Da PI: 6.1588

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013612101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.3	7.7e-09	77	123	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N +L k+l+ XP_013612101.1 77 KSKKRPSGNREAVRKYREKKKAKAASLEDEVVRLRAVNNQLMKRLQG 123 33445556**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-13	70	141	No hit	No description
SMART	SM00338	4.6E-9	73	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.68	75	122	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.4E-14	76	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.68E-7	77	123	No hit	No description
CDD	cd14686	5.68E-11	85	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDDGELEFPP SSSSMDSFLE ELLKDSHACT HTHTCNPPGP ENTHTHTCLH VHTKILPAAQ 60 SDDKETTDDT SESSGKKSKK RPSGNREAVR KYREKKKAKA ASLEDEVVRL RAVNNQLMKR 120 LQGQAALEAE VTRLKCLLVD IRGRIEGEIG AFPYQKPQPF SYRMQPCNMP CDVDDLYCLQ 180 NGNSGEGILM NGLNGCEFDQ LQCLGDQNLA GCSNENGTFN VDASGANKSK GGTCAAKAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013612101.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013612100.1	1e-180	PREDICTED: uncharacterized protein LOC106318602 isoform X1
Refseq	XP_013612101.1	1e-180	PREDICTED: uncharacterized protein LOC106318602 isoform X1
Refseq	XP_013641989.1	1e-180	basic leucine zipper 23 isoform X1
Refseq	XP_013641990.1	1e-180	basic leucine zipper 23 isoform X1
Swissprot	Q8GTS2	1e-131	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A078GN66	1e-178	A0A078GN66_BRANA; BnaC09g09130D protein
TrEMBL	A0A0D3E325	1e-178	A0A0D3E325_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DCH4	1e-178	A0A3P6DCH4_BRAOL; Uncharacterized protein
STRING	Bo9g024230.1	1e-179	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-118	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]