PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013612004.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 372aa MW: 41967.2 Da PI: 6.898

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013612004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.9	1.4e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELS+LCd++ +++fs+ gk XP_013612004.1 10 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 53 6799************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.605	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.09E-24	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.42E-24	2	84	No hit	No description
PRINTS	PR00404	6.2E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKPSLCCGR 60 RSSIEEVIAK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTEDLSTQ 120 ASILQARISE IHGRLSYWTE LDKINNVDHL GQLEISVRQS LDQLRAHKEH LGQQQQQAMQ 180 LENANFVKDW STCSLQDGIE IPLEQQLQSM SWILNSDNTT NIITEEHNPI PKREVECSAS 240 SSFGSYPGYF GTGKSSETSF LDELNTTNGD IKPQLCTNNN IIPYNSNIMQ NDIKHHQTYP 300 PPLPHPPVFN LPSNQREYHM NGFFEAPPQP NGTSTYNNNN HNQARFGSSS SSLPCSISML 360 DEYLFSQMQQ PN

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKPSLCCGR  60
RSSIEEVIAK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTEDLSTQ  120
ASILQARISE IHGRLSYWTE LDKINNVDHL GQLEISVRQS LDQLRAHKEH LGQQQQQAMQ  180
LENANFVKDW STCSLQDGIE IPLEQQLQSM SWILNSDNTT NIITEEHNPI PKREVECSAS  240
SSFGSYPGYF GTGKSSETSF LDELNTTNGD IKPQLCTNNN IIPYNSNIMQ NDIKHHQTYP  300
PPLPHPPVFN LPSNQREYHM NGFFEAPPQP NGTSTYNNNN HNQARFGSSS SSLPCSISML  360
DEYLFSQMQQ PN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	4e-12	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013612004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446459	0.0	DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBank	DQ652954	0.0	DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013612004.1	0.0	PREDICTED: agamous-like MADS-box protein AGL14 isoform X3
Refseq	XP_013713121.1	0.0	agamous-like MADS-box protein AGL30 isoform X3
Refseq	XP_013713122.1	0.0	agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0D3E7M1	0.0	A0A0D3E7M1_BRAOL; Uncharacterized protein
STRING	Bo9g072860.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-165	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]