PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013612000.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 376aa MW: 42485.8 Da PI: 7.086

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013612000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.9	1.5e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELS+LCd++ +++fs+ gk XP_013612000.1 10 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 53 6799************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.605	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-24	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.72E-24	2	84	No hit	No description
PRINTS	PR00404	6.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKPSLCCGR 60 RSSIEEVIAK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTERFSQD 120 LSTQASILQA RISEIHGRLS YWTELDKINN VDHLGQLEIS VRQSLDQLRA HKEHLGQQQQ 180 QAMQLENANF VKDWSTCSLQ DGIEIPLEQQ LQSMSWILNS DNTTNIITEE HNPIPKREVE 240 CSASSSFGSY PGYFGTGKSS ETSFLDELNT TNGDIKPQLC TNNNIIPYNS NIMQNDIKHH 300 QTYPPPLPHP PVFNLPSNQR EYHMNGFFEA PPQPNGTSTY NNNNHNQARF GSSSSSLPCS 360 ISMLDEYLFS QMQQPN

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKPSLCCGR  60
RSSIEEVIAK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTERFSQD  120
LSTQASILQA RISEIHGRLS YWTELDKINN VDHLGQLEIS VRQSLDQLRA HKEHLGQQQQ  180
QAMQLENANF VKDWSTCSLQ DGIEIPLEQQ LQSMSWILNS DNTTNIITEE HNPIPKREVE  240
CSASSSFGSY PGYFGTGKSS ETSFLDELNT TNGDIKPQLC TNNNIIPYNS NIMQNDIKHH  300
QTYPPPLPHP PVFNLPSNQR EYHMNGFFEA PPQPNGTSTY NNNNHNQARF GSSSSSLPCS  360
ISMLDEYLFS QMQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	4e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	4e-12	1	92	1	90	MEF2 CHIMERA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013612000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013612000.1	0.0	PREDICTED: agamous-like MADS-box protein AGL14 isoform X1
Refseq	XP_013612001.1	0.0	PREDICTED: agamous-like MADS-box protein AGL14 isoform X1
Refseq	XP_013612002.1	0.0	PREDICTED: agamous-like MADS-box protein AGL14 isoform X1
Refseq	XP_022565385.1	0.0	agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A0D3E7M1	0.0	A0A0D3E7M1_BRAOL; Uncharacterized protein
STRING	Bo9g072860.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-163	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]