PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 363aa MW: 39323.3 Da PI: 7.0356 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.4 | 6.4e-23 | 245 | 307 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke+kre+rkq+NRe+ArrsR+RK+ae+eeL kv++L aeN++L+++l +l++e++kl+ e+ XP_013611855.1 245 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 307 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 6.6E-25 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-13 | 129 | 204 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.5E-16 | 240 | 304 | No hit | No description |
SMART | SM00338 | 8.5E-20 | 245 | 309 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-21 | 245 | 307 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.76 | 247 | 310 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.25E-10 | 248 | 304 | No hit | No description |
CDD | cd14702 | 6.78E-20 | 250 | 299 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 252 | 267 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGSNEEGKTT QSDKPAQVQA PPPPEQSNVH VYHHDWAAMQ AYYGPRVAIT PQYYNSNGHA 60 PPYIWGSPSP MMAPYGTPYP PFCPPGGVYA HPALQMGTQP QGAVSQATPV VATPLNLEAH 120 PANSSGNTDQ GFMKKLKEFD GLAMSISNNK TGSAEHSSEP KNSQSSENDD SSNGSDGNAT 180 GGEQSRKKRS REGSPNNDGK PSSQIVPLLR DENEKQAVTM GTPVMPTVLD FPQPRHGAPH 240 EVWNEKEVKR EKRKQSNRES ARRSRLRKQA ETEELSVKVD ALVAENMTLR SKLGQLNDES 300 EKLRLENQAL LDQLKAQATG KTENLISGVD KNNNSVSGSS SSSKNAEQQL LNVSLRTDSV 360 AAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 267 | RRSRLRK |
2 | 261 | 268 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611855.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X83920 | 0.0 | X83920.1 B.napus mRNA for G-Box binding factor 2A. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611854.1 | 0.0 | PREDICTED: G-box-binding factor 2 isoform X2 | ||||
Refseq | XP_013611855.1 | 0.0 | PREDICTED: G-box-binding factor 2 isoform X2 | ||||
Swissprot | P42775 | 1e-169 | GBF2_ARATH; G-box-binding factor 2 | ||||
TrEMBL | A0A3P6DV31 | 0.0 | A0A3P6DV31_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g003700.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 1e-129 | G-box binding factor 2 |
Publications ? help Back to Top | |||
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