PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611853.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 364aa    MW: 39420.4 Da    PI: 7.0356
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.4e-23246308163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+
  XP_013611853.1 246 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 308
                     89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-24195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-13130205No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-16241305No hitNo description
SMARTSM003388.5E-20246310IPR004827Basic-leucine zipper domain
PfamPF001701.0E-21246308IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76248311IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10249305No hitNo description
CDDcd147026.88E-20251300No hitNo description
PROSITE patternPS000360253268IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSNEEGKTT QSDKPAQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI TPQYYNSNGH  60
APPYIWGSPS PMMAPYGTPY PPFCPPGGVY AHPALQMGTQ PQGAVSQATP VVATPLNLEA  120
HPANSSGNTD QGFMKKLKEF DGLAMSISNN KTGSAEHSSE PKNSQSSEND DSSNGSDGNA  180
TGGEQSRKKR SREGSPNNDG KPSSQIVPLL RDENEKQAVT MGTPVMPTVL DFPQPRHGAP  240
HEVWNEKEVK REKRKQSNRE SARRSRLRKQ AETEELSVKV DALVAENMTL RSKLGQLNDE  300
SEKLRLENQA LLDQLKAQAT GKTENLISGV DKNNNSVSGS SSSSKNAEQQ LLNVSLRTDS  360
VAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262268RRSRLRK
2262269RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839200.0X83920.1 B.napus mRNA for G-Box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611851.10.0PREDICTED: G-box-binding factor 2 isoform X1
RefseqXP_013611852.10.0PREDICTED: G-box-binding factor 2 isoform X1
RefseqXP_013611853.10.0PREDICTED: G-box-binding factor 2 isoform X1
SwissprotP427751e-169GBF2_ARATH; G-box-binding factor 2
TrEMBLA0A0D3DZR30.0A0A0D3DZR3_BRAOL; Uncharacterized protein
STRINGBo9g003700.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-129G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]