PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611767.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 361aa    MW: 38237.1 Da    PI: 4.39
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35491412103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++
  XP_013611767.1  49 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRD 134
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_013611767.1 135 IQRRKIS 141
                     ****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5745138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3446138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3746138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1707.7E-5216244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPGEQTGETP TAAGVGGGGG GCSAGNSGGS SGCGPVGGGD SQRSIPTPFL TKTYQLVDDP  60
VYDDLISWND DGSTFIVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS  120
NDCFRRGEKI LLRDIQRRKI SQPAMAAAAA AAAAAAVTVA AAVPAVPHAV SPSNSGEEQV  180
ISSNSSPAAA AAASGGGGGQ VGVVLQRTTS CTTAPELVEE NERLRKENVQ LSQELTKLKG  240
LYSNIYTLMS NFTSGQADCA PEGKALDLMP ERMGEDMATA SGVETGIGLK LDEDLTPRLF  300
GVSIGAKRAR RDELVTAEEE DDERREGSNQ EGGEQGSDVK SEPMEEDNSD EHNGPWLELG  360
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-273513815129Heat shock factor protein 1
5d5v_B2e-273513815129Heat shock factor protein 1
5d5v_D2e-273513815129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611767.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_013714497.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-154HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A078J5920.0A0A078J592_BRANA; BnaC09g52680D protein
TrEMBLA0A3N6Q6T20.0A0A3N6Q6T2_BRACR; Uncharacterized protein
TrEMBLA0A3P6EEX50.0A0A3P6EEX5_BRAOL; Uncharacterized protein
STRINGBra040968.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-141HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]