PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611567.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 434aa    MW: 48070.5 Da    PI: 4.5392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.13.1e-4861341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+kv gkkl + ++i+++diyk+eP+dLp k  +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk+++vl
  XP_013611567.1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIADLDIYKFEPSDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGKERAVL 99 
                     579************************999.89**************96347778888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     + +ge+vg  ktLv++ g++p+ge+tdWvmheyrle
  XP_013611567.1 100 C-NGEVVGKIKTLVYHVGKSPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-583156IPR003441NAC domain
PROSITE profilePS5100553.2116156IPR003441NAC domain
PfamPF023658.2E-268133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGKTELAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAD LDIYKFEPSD LPDKSYIKSG  60
DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERAVLC NGEVVGKIKT LVYHVGKSPR  120
GERTDWVMHE YRLEDNALTQ KNIPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWRDEE  180
HRTDVPSTSN ASIFLHGPNP ETSLAVAPSH DSNKACFGGM ISESCVSDFP PATATTSVAA  240
HLTDAANAPV PAPLLDPSSS ASLAQTLQAP NDDDDLYAML DLFVDEDEFL PFSEPNTNEA  300
RHDPIVSAPI SLGEEVIFDD LPDFSNMHDN NSIPRTPSYN LIENSELYLE LQDLTTPLAP  360
PHVWNVSDSY LTAPLAPPQV GSVSDSYLTA PPAPPQNGNV SEPFLSPQGH FDFSANANDD  420
PYSLLRPWDN TDQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42615615168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667580.0KC966758.1 Brassica napus NAC transcription factor 82 (NAC82.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611566.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_013611567.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A0D3EGR40.0A0A0D3EGR4_BRAOL; Uncharacterized protein
STRINGBo9g174090.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-168NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]