PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013611366.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 335aa MW: 37408.5 Da PI: 5.9944

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013611366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.4	1.2e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C+aCk+lrrkC+++Cv+ap+fp +qp+kf +vhk FGasnv kll++lp ++reda++slvyeAe r+++PvyG+vg+i+ qq+l+q + +++ XP_013611366.1 7 PCSACKFLRRKCTRECVFAPHFPPDQPNKFSCVHKAFGASNVAKLLSELPLNQREDAVTSLVYEAETRIQEPVYGCVGLISLQQQRLKQIQRDTD 101 7*******************************************************************************************999 PP DUF260 96 llkee 100 ++++e XP_013611366.1 102 VARRE 106 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.585	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MASSNSPCSA CKFLRRKCTR ECVFAPHFPP DQPNKFSCVH KAFGASNVAK LLSELPLNQR 60 EDAVTSLVYE AETRIQEPVY GCVGLISLQQ QRLKQIQRDT DVARRELATY IGPEAMFPIL 120 QPQQPHFMPQ SQTQQPQFVP ETLQTVFMPQ TQETHFTPQT HQTQFIPQTQ KFMPETQQPS 180 SSSSVSAELT QQQHHDPSMM VIPTAQLYHL QQQQQFFEFQ QPEAVAGEQH SEMLRAYGEG 240 GSSSSHQHHQ NQPQAHVLRF NDGFDSVPTG SVTSTGFNQL TPSGTTVTGV SHSLALGGGT 300 YDIEARLFMP TQSSQQRPLQ TQETQTSSES DEEGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	3	110	7	114	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269\|PubMed:15821980}.

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013611366.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013611366.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-97	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0D3E2L0	0.0	A0A0D3E2L0_BRAOL; Uncharacterized protein
STRING	Bo9g021590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM26544	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-88	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]