PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611237.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 1174aa    MW: 129754 Da    PI: 7.117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F +  + +
  XP_013611237.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIFRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVR--DGK 218
                     99*****************************98888885.9************************************************4..568 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_013611237.1 219 GHLLLGIRRA 228
                     889****997 PP
2Auxin_resp117.51.1e-38253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++  rr++Gtv+g+sdldpvrW+nS+Wr+L+
  XP_013611237.1 253 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 335
                     799******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-42117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-42121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-20126227No hitNo description
SMARTSM010194.6E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182127229IPR003340B3 DNA binding domain
PfamPF023625.2E-21127228IPR003340B3 DNA binding domain
PfamPF065071.0E-33253335IPR010525Auxin response factor
PfamPF023093.5E-910451133IPR033389AUX/IAA domain
PROSITE profilePS5174526.25610471140IPR000270PB1 domain
SuperFamilySSF542771.08E-810601125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1174 aa     Download sequence    Send to blast
MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK  60
QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMSLQ PVNKYDRDAL LASDMGLKIN  120
RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR  180
HIFRGQPKRH LLTTGWSVFV STKRLFAGDS VLFVRDGKGH LLLGIRRANR QQPALSSSVI  240
SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI  300
FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT  360
PFYICPPPFF RPRFAGQPGM PDDGTDMESA LKRAMPWLDN GLQMKDPSST IFPGLSLVQW  420
MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDPSK LLSFQTPPGG ISSSSLQFSK  480
PNPQAAMSQL PQPPTTLSQQ QHQHQHQQQQ QQSQPLQQPQ SHQHQHQHQH QQQQQQQPQS  540
LHQQQQQQSL LLQQQQQQPL QQQTQQQQLQ QQQQLRMQQL QSHTHPQSQQ SPTHPQSQSH  600
PQQLQPHKLQ QFQLPQNQLY NGHQATQQHQ AQQTSMHHLQ PQVVSGSIAS SVIAPPSSSL  660
NQSFQQQQQS TQLQHTHRHI GASTSQSIVI ETSKSSSNLM SIPPQDTQFS RQMEQQQPPG  720
LVQGHNQPQQ KTQQSQVQQI FPQSLLEQPH LQFQLLQRLQ QQQQKQQQFL SPGSSSLPSQ  780
LLHQQLQSQQ FPQLPSPSQV QQFPSSCTNT GLPTLQPPQM LVSRPQDKQN PPVGGGAKAY  840
SGITDGGDAP SSSTSPSTNN CQISSSTFLN RSQSGPAILI PDPAVDVSGS LVQDLYSKSD  900
MRLKHELGSQ QKPKASLTDH QLEASASGTS YGLDGGENNR QQNFLSTNFG LDGDSRNSLF  960
GGGANAENGF VPETLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR TQSFGIPNVP  1020
AISNDLAVND AGVLGGGLWP TQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM  1080
FGIEGQLEDP LTSDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA EVPQLSLDGN  1140
FAGLPATNQA CSGGDNGNGW RGQYDDNSAT SFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642135651388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794690.0JN979469.1 Brassica rapa subsp. pekinensis auxin response factor 7-1 (ARF7-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611237.10.0PREDICTED: auxin response factor 7-like
TrEMBLA0A0D3EDP60.0A0A0D3EDP6_BRAOL; Auxin response factor
STRINGBo9g151530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein