PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 35518.9 Da PI: 8.5754 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.6 | 2.1e-48 | 25 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s XP_013611181.1 25 LPGFRFHPTDEELVGFYLSKKVFLKKsSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSD 118 59*******************877774778889***************.5567789**************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++glkktLv+y g+a kg+ktdW+mhe+rl XP_013611181.1 119 gsSKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153 666677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-50 | 24 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.636 | 24 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-24 | 26 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEEAMGSWDT RREEQEEEEK QVLKLPGFRF HPTDEELVGF YLSKKVFLKK SSKIDEIISQ 60 IDIYKFDPWD LPRSRNTEKE SYFFCRRGRK YRNSIRPNRV TGSGFWKATG IDKPVYSDGS 120 SKAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSTLVNPT PSSLLHAEVW 180 TLCRIFKRNV SSRKYTPDWR ELAGGKRMKP QQSKYQEAYI SFGDNESSSS TNNINVMEPK 240 ENYERNVFQL RQTPHQHQPI PVDTTITTQV DSTVPHFSND NIHDITYENW DELRSVVEFA 300 FGPSFLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 15 | 194 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 15 | 194 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 15 | 194 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 15 | 194 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 15 | 194 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 15 | 194 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 15 | 194 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611181.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 9e-96 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 9e-96 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611181.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-73 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D3AE44 | 0.0 | A0A0D3AE44_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FYA3 | 0.0 | A0A3P6FYA3_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g138800.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-171 | NAC family protein |