PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611102.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 438aa    MW: 48825.3 Da    PI: 5.8397
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.6e-32226280155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  XP_013611102.1 226 KPRMRWTPELHESFLNSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 280
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-29224281IPR009057Homeodomain-like
SuperFamilySSF466891.16E-16225280IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24226281IPR006447Myb domain, plants
PfamPF002493.5E-8228279IPR001005SANT/Myb domain
PfamPF143794.2E-22316362IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNGHRLVSTA QDECNKGIQK PCSSSLSPAY NFLNVQPETT RKSPFIRSQS PDWPKNSTFS  60
RSSTFCTNLY SSSSSANETK KHLGNSLPFL PDPSASASGV ESARSPSVFS EDLGNPFDGD  120
NNSSLVKDFF NLPADACSNG GYHDLDCSND SLSDQLELQF LSDELELAIT DRAETPRLDE  180
IYEKPMASPI PVTVLSPSQR CDAGAMCIDP VSPHPSPKSS SAANHKPRMR WTPELHESFL  240
NSVNKLEGPE KATPKAVLKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE KKNVNSEEKK  300
LALSNSEADE KKKGAMQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA KYLEKMLEEQ  360
RKAGRLFSSS SSSSQTLLSP SDDETRPDSQ NMSKTEASLP QPSSSAKHIA SETEDDQCES  420
PQKRRRLENS TEPQDSER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-24226283259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422426KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1278610.0EF127861.1 Brassica rapa subsp. chinensis MYBogu mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611102.10.0PREDICTED: uncharacterized protein LOC106317859
RefseqXP_013611109.10.0PREDICTED: uncharacterized protein LOC106317859
RefseqXP_013611117.10.0PREDICTED: uncharacterized protein LOC106317859
RefseqXP_013611126.10.0PREDICTED: uncharacterized protein LOC106317859
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A0D3AE290.0A0A0D3AE29_BRAOL; Uncharacterized protein
STRINGBo1g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]