PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 438aa MW: 48825.3 Da PI: 5.8397 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.9 | 8.6e-32 | 226 | 280 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_013611102.1 226 KPRMRWTPELHESFLNSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 280 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 224 | 281 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-16 | 225 | 280 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-24 | 226 | 281 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 228 | 279 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.2E-22 | 316 | 362 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MNGHRLVSTA QDECNKGIQK PCSSSLSPAY NFLNVQPETT RKSPFIRSQS PDWPKNSTFS 60 RSSTFCTNLY SSSSSANETK KHLGNSLPFL PDPSASASGV ESARSPSVFS EDLGNPFDGD 120 NNSSLVKDFF NLPADACSNG GYHDLDCSND SLSDQLELQF LSDELELAIT DRAETPRLDE 180 IYEKPMASPI PVTVLSPSQR CDAGAMCIDP VSPHPSPKSS SAANHKPRMR WTPELHESFL 240 NSVNKLEGPE KATPKAVLKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE KKNVNSEEKK 300 LALSNSEADE KKKGAMQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA KYLEKMLEEQ 360 RKAGRLFSSS SSSSQTLLSP SDDETRPDSQ NMSKTEASLP QPSSSAKHIA SETEDDQCES 420 PQKRRRLENS TEPQDSER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-24 | 226 | 283 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 422 | 426 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF127861 | 0.0 | EF127861.1 Brassica rapa subsp. chinensis MYBogu mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611102.1 | 0.0 | PREDICTED: uncharacterized protein LOC106317859 | ||||
Refseq | XP_013611109.1 | 0.0 | PREDICTED: uncharacterized protein LOC106317859 | ||||
Refseq | XP_013611117.1 | 0.0 | PREDICTED: uncharacterized protein LOC106317859 | ||||
Refseq | XP_013611126.1 | 0.0 | PREDICTED: uncharacterized protein LOC106317859 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A0D3AE29 | 0.0 | A0A0D3AE29_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g138650.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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