PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013611095.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 879aa    MW: 98501 Da    PI: 8.3834
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013611095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.4e-05193211120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG H+C  lCH+GpC +Cp+
  XP_013611095.1 193 CG-HRCLLLCHPGPCASCPK 211
                     **.***************96 PP
2zf-NF-X117.87.5e-06236264220
        zf-NF-X1   2 G..........kHkCqklCHeGpCppCpq 20 
                     G          +H+C ++CH G+CppC++
  XP_013611095.1 236 GdvcdkvldceIHSCREICHDGECPPCRE 264
                     555555555559***************85 PP
3zf-NF-X118.64.2e-06426450119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkCq++CH+G+C pCp
  XP_013611095.1 426 CGkklkcrNHKCQSPCHRGQCAPCP 450
                     777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.69885147IPR001841Zinc finger, RING-type
PROSITE patternPS01359085146IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.16E-4181229No hitNo description
PfamPF014220.0045193210IPR000967Zinc finger, NF-X1-type
SMARTSM004380.056193211IPR000967Zinc finger, NF-X1-type
CDDcd060087.45E-9235283No hitNo description
SMARTSM004382.5E-4245264IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016247263IPR000967Zinc finger, NF-X1-type
CDDcd060082.91E-6288328No hitNo description
PfamPF014220.7298316IPR000967Zinc finger, NF-X1-type
SMARTSM004380.098298317IPR000967Zinc finger, NF-X1-type
CDDcd060082.49E-8342391No hitNo description
PfamPF014220.0022352371IPR000967Zinc finger, NF-X1-type
SMARTSM004380.075352372IPR000967Zinc finger, NF-X1-type
PfamPF014220.0092405423IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051405424IPR000967Zinc finger, NF-X1-type
CDDcd060087.39E-11422470No hitNo description
PfamPF014229.6E-4426450IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013432451IPR000967Zinc finger, NF-X1-type
SMARTSM00438110489510IPR000967Zinc finger, NF-X1-type
PfamPF014224.8499509IPR000967Zinc finger, NF-X1-type
PfamPF0142276518527IPR000967Zinc finger, NF-X1-type
SMARTSM00438190518563IPR000967Zinc finger, NF-X1-type
PfamPF014220.077600611IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4600631IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41641659IPR000967Zinc finger, NF-X1-type
PfamPF0142216642658IPR000967Zinc finger, NF-X1-type
SMARTSM0043815704725IPR000967Zinc finger, NF-X1-type
PfamPF014228.1706718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MAGSATNFRW KPPPQPQPSQ QQNISDSDSD SGSDSDSHQQ NRHNDLSNSI FKAYLDCHSS  60
SSPSSLDLSK IQSFLASSSS GAVSCLICLE RIKRTDPTWS CTSSCFAVFH LFCIQNWARQ  120
CLDVHAALAV TRPSTETEPV WNCPKCRSSY LKSKIPSRYL CYCGKEEDPP ADNPWILPHS  180
CGEVCERGLS NNCGHRCLLL CHPGPCASCP KLVKSKCFCG GVEDVRRCGH KLFSCGDVCD  240
KVLDCEIHSC REICHDGECP PCRERAVYRC CCGKVEEEKD CCERVFRCEG SCESKLNCGK  300
HVCERGCHGG ECGLCPYQGK RSCPCGKKFY QGLSCDVAAP LCGGTCDKVL GCGYHRCPER  360
CHRGACLETC RIVVTKSCRC GGTKKQVPCR QDVVCERKCQ RMRDCGKHPC RRRCCDGQCP  420
PCSEICGKKL KCRNHKCQSP CHRGQCAPCP IMVSISCACG QTHFEVPCGT ENNQKPPRCR  480
KLCNITPLCR HGQIQKPHKC HYGACPPCRL PCDEEYPCGH KCKLRCHGPR PPPNREFILK  540
PTKKMLNVHV ESTPGSPCPR CPELVWRPCV GHHLAAERMM VCSDKTQFAC DNLCGNPLPC  600
GNHYCSFTCH PLEIRSSSLD KRSESCEKCE LRCQKERSPR CQHPCPRRCH PEDCPPCKTL  660
VKRSCHCGAM VHAFECIEYN TLSEKDQSKA RSCRGPCHRK LPNCTHLCPE ICHPGQCPSP  720
EKCGKKVLVR CKCLTLKKEW LCKDVQAAHR ANSSDPKDVV PKNQFGVGLL PCDSNCKTKQ  780
QMAESVLQQR NVKEIEAKEE PSGKNATKRR KRRERGQDIK ETSRLQKLTA AIKKVVMLVM  840
LIAVLVAVSY YGYKGILWLS DWMNEVEEQR QKSRRYPRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013611095.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611095.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
RefseqXP_013737868.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D3EHK80.0A0A0D3EHK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E5620.0A0A3P6E562_BRAOL; Uncharacterized protein
STRINGBo9g177030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors