PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610852.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 439aa    MW: 49404.7 Da    PI: 6.2047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.44.7e-14741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +C++t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013610852.1  7 CCHCRVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.0E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-10546No hitNo description
CDDcd002028.18E-16663No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003208.2E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.884740IPR000679Zinc finger, GATA-type
PfamPF139194.3E-10214312IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGKQGPCCHC RVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDQIEIE  60
DHRVQKTMMI NKMSMNKKIL KRKSSHQENF TVKRTSFELN NGFKNEEASN RSSSGSVVSN  120
SESCDQSNAW ETTFPCKKRT CVVVGRPKAA SSVEKLTKDL FSILQEQQQS SCLSGCSEVD  180
LLFENESPMV IGHGSVLMRD EESEASSLLV ESRKSVSEQH KTKPQVLGRP SLPLCNIDLK  240
DIFNFDEFMK KFTEEEQQKL MKLLPGVDSV DLPDSLRSMF ESSQFKDNFS LFQQLVADGV  300
FETLSSSSKP EEFKRLAKLA LSDPNKSHLL ESYCMLKEQR KGSEDSVTTS ERPSESLSQN  360
FSETRGVMKS PKEVMKMRSK HNGTEEIVEN SVSSFNNHMR YGGPMVFSSE DNDICDEEDV  420
LVDVPSNGSF PQAELLHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610852.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610852.10.0PREDICTED: GATA transcription factor 27-like isoform X3
RefseqXP_013712806.10.0GATA transcription factor 27-like isoform X3
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3E7650.0A0A0D3E765_BRAOL; Uncharacterized protein
STRINGBo9g069320.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27