PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610851.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 461aa    MW: 51887.6 Da    PI: 6.5132
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.35e-14741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +C++t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013610851.1  7 CCHCRVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.0E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-10546No hitNo description
CDDcd002028.27E-16663No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.8E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.884740IPR000679Zinc finger, GATA-type
PfamPF139195.0E-10241336IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGKQGPCCHC RVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDQIEIE  60
DHRVQKTMMI NKMSMNKKIL KRKSSHQENF TVKRTSFELN NGFKNEEASN RSSSGSVVSN  120
SESCDQSNAW ETTFPCKKRT CVVVGRPKAA SSVEKLTKDL FSILQEQQQS SCLSGCSEVD  180
LLFENESPMV IGHGSVLMRD EESEASSLLV ESRKSVSVRS VEFEVNRVQR SLNLGGNDIK  240
QEQHKTKPQV LGRPSLPLCN IDLKDIFNFD EFMKKFTEEE QQKLMKLLPG VDSVDLPDSL  300
RSMFESSQFK DNFSLFQQLV ADGVFETLSS SSKPEEFKRL AKLALSDPNK SHLLESYCML  360
KRKGSEDSVT TSERPSESLS QNFSETRGVM KSPKEVMKMR SKHNGTEEIV ENSVSSFNNH  420
MRYGGPMVFS SEDNDICDEE DVLVDVPSNG SFPQAELLHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610851.10.0PREDICTED: GATA transcription factor 27-like isoform X2
RefseqXP_013712805.10.0GATA transcription factor 27-like isoform X2
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3E7650.0A0A0D3E765_BRAOL; Uncharacterized protein
STRINGBo9g069320.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27