PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610841.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 252aa    MW: 28363.6 Da    PI: 9.7115
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201272257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+++tkeq++ Le+l+++  r+psa+++++++ +l    +++ ++V++WFqN++a++++
  XP_013610841.1 12 SPRWNPTKEQITLLENLYKQgIRTPSADQIQQITGRLrahgHIEGKNVFYWFQNHKARQRQ 72
                    58*****************99**************************************97 PP
2Wus_type_Homeobox114.26.7e-371274365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi++Le+lyk+G+rtP++++iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq
     XP_013610841.1 12 SPRWNPTKEQITLLENLYKQGIRTPSADQIQQITGRLRAHGHIEGKNVFYWFQNHKARQRQKQ 74
                       78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-12576IPR009057Homeodomain-like
PROSITE profilePS5007110.916873IPR001356Homeobox domain
SMARTSM003892.6E-61077IPR001356Homeobox domain
PfamPF000463.3E-181372IPR001356Homeobox domain
CDDcd000861.58E-61374No hitNo description
Gene3DG3DSA:1.10.10.605.6E-81372IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENEGSAGTG SSPRWNPTKE QITLLENLYK QGIRTPSADQ IQQITGRLRA HGHIEGKNVF  60
YWFQNHKARQ RQKQKQDRIA SFNRLLHKTS RFFHPIPCSN VGCVNPYYLH QVRDHHDQHG  120
SAYRQDLHSS KVMLPIGGYE KRTTIDHKKH VSDITTTTAR MSMSSSSLRF DRFALGNHGY  180
FSEGINVNTN GLKTLPLFPL QPLDAANDSG VGNSSFSLLH DSPVTYCGDD GGRGQPFIDF  240
FSSRFDNSGN GL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac, but not in the synergids, the antipodals or the male gametophyte. After fertilization, it is expressed in the zygote. After the first division of the zygote, it is detected exclusively in the apical daughter cell, while WOX8 is expressed in the basal daughter cell. Subsequently, it is expressed in all cells of the 4-cell embryo proper and predominantly in the apical domain of the 8-cell embryo. However, in some 8-cell embryos it is also weakly expressed in the central domain suggesting that expression shifts to the most apical cells during this stage. Expression remains restricted to the apical domain in the 16-cell embryo and the early-globular stage. Not expressed in the apical domain thereafter. However, in heart stage embryos it is weakly expressed in a ring of epidermal cells approximately at the junction of hypocotyl and root. Not expressed in mature embryos, endosperm or postembryonically in inflorescences. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610841.10.0PREDICTED: WUSCHEL-related homeobox 2
SwissprotQ6X7K11e-131WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A0D3ECR10.0A0A0D3ECR1_BRAOL; Uncharacterized protein
STRINGBo9g138280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-123WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]