PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013610800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 17411.1 Da PI: 9.4759 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 52 | 110 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r +NR+AA++sR +K+++++ L +k+ L + ++L++++e+ +++ + l+ e+ XP_013610800.1 52 KKLKRIVSNRVAAQKSRWKKLQYVDDLVKKSRDLNWQVSMLRSQVEMASEQKQCLEREK 110 8999*******************************************999988877665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.6E-10 | 48 | 112 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.944 | 50 | 113 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-11 | 52 | 106 | No hit | No description |
Pfam | PF00170 | 1.8E-8 | 52 | 110 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.8E-11 | 52 | 107 | No hit | No description |
CDD | cd14703 | 2.62E-10 | 53 | 104 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 55 | 70 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MSEPSFPVPT SFQVSNDGSQ VEEKKTGYLN YEVEPGFTIR LRQNIDPAMD PKKLKRIVSN 60 RVAAQKSRWK KLQYVDDLVK KSRDLNWQVS MLRSQVEMAS EQKQCLEREK MELKECMAGW 120 IQRFISDQGE IEANTAEIER LKKKMAHMI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013610800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610800.1 | 1e-108 | PREDICTED: basic leucine zipper 19 | ||||
Refseq | XP_013746785.1 | 1e-108 | basic leucine zipper 19 | ||||
TrEMBL | A0A0D3EH24 | 1e-106 | A0A0D3EH24_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ET63 | 1e-106 | A0A3P6ET63_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g175190.1 | 1e-107 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14418 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07160.1 | 1e-59 | bZIP family protein |