PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28646.4 Da PI: 4.4031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k++s++ +L H+++H XP_013610796.1 65 FICRFCNKRCSSSQSLGGHMNSH 87 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.34E-5 | 59 | 97 | No hit | No description |
PROSITE profile | PS50157 | 8.829 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSSASSSLAQ LKTCNDINVA VEESKETATE NNNPGLGSDS QEVVTERRSE NPSLGSGAVP 60 TGNGFICRFC NKRCSSSQSL GGHMNSHKRE LQWERKQKEN EQQFHRQWIL SQYSQGALSN 120 DNNLGNTSEP FKRICTGLYP SFNSGLMDMN MTVVPRMAPT GFFSGNTFTN GSFSGGLEPI 180 PSYNNYPPML PRNVPPFPPH RTTNLPSYWY PQENVLNEED VILKLGNDNI VEIDDDDDDD 240 AVDQPEEGPS KSWGADLSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610796.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610796.1 | 0.0 | PREDICTED: zinc finger protein STAMENLESS 1-like | ||||
TrEMBL | A0A0D3E151 | 0.0 | A0A0D3E151_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 8e-68 | C2H2 family protein |