PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | DBB | ||||||||
Protein Properties | Length: 159aa MW: 17309.4 Da PI: 5.5494 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.3e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e++ C +++ lC+ C + H+ H +vp XP_013610737.1 4 QCEVCEKAEAEVLCCSDEAALCKPCDITVHEAnklfqrHHRVP 46 7*****************************7788999977776 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 58 | 95 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 ++ C+ ++e + +fC d++ llC+dC ++H ++H+ XP_013610737.1 58 APLCDICKERKGYFFCLDDRALLCNDCDGAIHicSSHQ 95 689******99*******************98434476 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.793 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.53E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 5.4E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.414 | 56 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-12 | 56 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-7 | 58 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.13E-8 | 59 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MKIQCEVCEK AEAEVLCCSD EAALCKPCDI TVHEANKLFQ RHHRVPLQKP SSTTSSAAPL 60 CDICKERKGY FFCLDDRALL CNDCDGAIHI CSSHQRFLLS GVQASDQSLT KSSGCSTNLS 120 SETYHIQSKA SLNSQYSSEE NEAGNSGETD KTPSVILSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610737.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610737.1 | 1e-114 | PREDICTED: B-box zinc finger protein 23 | ||||
Refseq | XP_022547442.1 | 1e-114 | B-box zinc finger protein 23-like | ||||
Refseq | XP_022565431.1 | 1e-114 | B-box zinc finger protein 23-like | ||||
Refseq | XP_022565458.1 | 1e-114 | B-box zinc finger protein 23-like | ||||
Swissprot | O82617 | 3e-88 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | A0A0D3E8W8 | 1e-112 | A0A0D3E8W8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EAK9 | 1e-112 | A0A3P6EAK9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g088220.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12502 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10240.1 | 6e-81 | DBB family protein |
Publications ? help Back to Top | |||
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