PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610715.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 234aa    MW: 26683.3 Da    PI: 9.0294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.51.7e-4261372128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     ++GfrF Pt++el+ +yL++++eg++  ++++vi+ +d+++veP++Lp+    +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+  +
  XP_013610715.1   6 TVGFRFYPTEDELIAFYLRNQLEGRSgDTIHRVIPVLDVFEVEPSHLPNiagdRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGP 100
                     78***********************96666778***************656776677888*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++
  XP_013610715.1 101 VFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137
                     ***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-464162IPR003441NAC domain
PROSITE profilePS5100546.5855162IPR003441NAC domain
PfamPF023657.4E-237136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAKELTVGFR FYPTEDELIA FYLRNQLEGR SGDTIHRVIP VLDVFEVEPS HLPNIAGDRC  60
RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VFSKDNRMIG VKKTMVFYTG  120
KAPTGRKTKW KMNEYKAVDE TFNVSIVPKL RHEFSLCRVY VTSGNSRAFD RRPMGIFQAE  180
RMLTRDVAVG ERSVRVESSP EASMSGGHGY LFVNGEMVDG LTEPIWEWEQ LSWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-30516720173NAC domain-containing protein 19
3swm_B1e-30516720173NAC domain-containing protein 19
3swm_C1e-30516720173NAC domain-containing protein 19
3swm_D1e-30516720173NAC domain-containing protein 19
3swp_A1e-30516720173NAC domain-containing protein 19
3swp_B1e-30516720173NAC domain-containing protein 19
3swp_C1e-30516720173NAC domain-containing protein 19
3swp_D1e-30516720173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758060.0AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBankAY0869440.0AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610715.11e-174PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-143NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0D3EDE51e-173A0A0D3EDE5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EKP51e-173A0A3P6EKP5_BRAOL; Uncharacterized protein
STRINGBo9g148540.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-134NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]