PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 279aa MW: 32057.1 Da PI: 9.298 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.4 | 7.8e-23 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+sn qvtfskRr g++KKA+EL +LC+a++av++fs+ gk+y + XP_013610714.1 16 MENESNLQVTFSKRRSGLFKKASELNTLCGADIAVVVFSPGGKVYSF 62 79*******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.02 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.13E-34 | 7 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-27 | 7 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-26 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MAKKSKGRQR ITMAKMENES NLQVTFSKRR SGLFKKASEL NTLCGADIAV VVFSPGGKVY 60 SFGHPNVENV LNRFKNINQP PLNQNNNMRF NEARPNDAIR VMNDFLTQVM NDLELAKKKN 120 EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKGLLEKLK SYVTDEASKH FQAIFPQPNF 180 YGGSSSGAPF RDGGYINPNL DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY 240 SLNYMHGFNQ YRNQNQNLNF KEEGISENEC HQDGLPPHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-15 | 7 | 87 | 2 | 82 | MEF2C |
5f28_B | 9e-15 | 7 | 87 | 2 | 82 | MEF2C |
5f28_C | 9e-15 | 7 | 87 | 2 | 82 | MEF2C |
5f28_D | 9e-15 | 7 | 87 | 2 | 82 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610714.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 7e-94 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A078JBW0 | 0.0 | A0A078JBW0_BRANA; BnaCnng38710D protein | ||||
TrEMBL | A0A0D3ED43 | 0.0 | A0A0D3ED43_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g142570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-69 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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