PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 40530.8 Da PI: 4.6705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r +lg+f+taeeAa+a++aa+++++g XP_013610578.1 119 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 168 69*******.**********954...39************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.65E-17 | 119 | 177 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-22 | 119 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.54 | 119 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-40 | 119 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 119 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-13 | 120 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MCGGAIISDF IPPPSFRRVT SEFLWPDLKK SKGKASKKRS DFFDLDDEFE ADFQGFEDDD 60 ASFDCEDDDD EVFAKVKPFV FTATTKPVAS PPTGSVSGKK IIESGGQAEK SAKRKRKNQY 120 RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGSK AKVNFPEESN 180 NNRSVSLKRP SAKKLVAKPN QSPISVQQPM SQYCNNSFGD VSFVEEKPQM YNNQFGLANS 240 YNNQYFSSDQ GSNSFDCSEF GRSDHGPKTP EISSMLVNNN QAPFIEVTNA AKKLKPSSDD 300 WTSNNDQSDD LMAYLDNALW ESPSPLEVEA MLGVDAAAVT QGEENPMDLW SLDDINYMLE 360 GVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-22 | 118 | 185 | 13 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610578.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610578.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2 isoform X1 | ||||
Swissprot | Q9LUM4 | 1e-166 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | A0A0D3ADR2 | 0.0 | A0A0D3ADR2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g134510.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-151 | related to AP2 2 |