PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610570.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 556aa    MW: 63456.6 Da    PI: 6.6944
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.63.6e-21114213197
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvl+ sd++++g +vl k++a e+       ++ +  s++++ +d +g +W++k++ r++++++++t+GW+eF+k ++L +gD++vF +   +
  XP_013610570.1 114 FTKVLSASDTSTNGGFVLYKRHAIEClplldvsQLTP--SQEIIAKDIHGHEWSFKHTLRGTPKKHLFTSGWNEFAKGKKLVAGDSFVFLR--GE 204
                     89****************************9866554..559************************************************3..37 PP

                     EE..EEEEE CS
              B3  89 efelvvkvf 97 
                     ++e +v++ 
  XP_013610570.1 205 NGESRVGIT 213
                     777788875 PP
2Auxin_resp83.73.9e-28240319183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a +a+++k++F v+Y+Pr+  s+F+v+++k+++ +++k+ +G++f m+f+++d +e+r+ Gtvvgv+d++  +W++S+WrsL+
  XP_013610570.1 240 ALNAIENKCMFVVFYKPRS--SQFIVNFDKFVDRVNNKFNIGSKFSMKFDGKDLNEIRYNGTVVGVRDFSD-HWKDSEWRSLE 319
                     6799**************6..9**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-34105228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-27111219IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-19113214No hitNo description
PfamPF023621.7E-18114213IPR003340B3 DNA binding domain
SMARTSM010191.9E-18114216IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351114216IPR003340B3 DNA binding domain
PfamPF065071.4E-25240318IPR010525Auxin response factor
SuperFamilySSF542773.53E-7445520No hitNo description
PROSITE profilePS5174517.806445525IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAGDQIMHAQ PEVLAIDETN NYLNNKLWKL CAGPLFDTPK IGDKLVASMD DELCQLKPIF  60
DIPSKICCNV FSIKLKVETN TNEIYAEVSL LPDTSDVEIP IPKTENNIQN INYFTKVLSA  120
SDTSTNGGFV LYKRHAIECL PLLDVSQLTP SQEIIAKDIH GHEWSFKHTL RGTPKKHLFT  180
SGWNEFAKGK KLVAGDSFVF LRGENGESRV GITKAAHQQR NIQTSLISKQ SMHHSVVATA  240
LNAIENKCMF VVFYKPRSSQ FIVNFDKFVD RVNNKFNIGS KFSMKFDGKD LNEIRYNGTV  300
VGVRDFSDHW KDSEWRSLEV QWDEAATIPR PDKVSPWEIE LLTHSSNIFK SDTLKHKRQL  360
EKHKRQLEVH EFGTKMWVPT IYNERMVQAM KEPSTTTATT SCRLFGVDLM VPAITKDPVE  420
PIVSNKKCKI SKIFEDEKVD HVQATSRTKV HMEGVIERTV DLTIFDGYNQ LIDELERLFD  480
IKGELHMHNQ WKMFFIYNDG DMMILGDDPW PKFCNMAKEI FICSKEDVKI GIANNRFSEG  540
DPALTTTILP PDVNNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1072034716360Auxin response factor 1
4ldy_B1e-1072034716360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794860.0JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610570.10.0PREDICTED: putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLH9B4E70.0H9B4E7_BRARP; Auxin response factor
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14