PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30682.8 Da PI: 6.2581 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.4e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl XP_013610539.1 14 RGPWTIEEDHRLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T E++++ +++ qlG++ W++Ia+ ++ gRt++++k++w++ XP_013610539.1 67 RGGFTDAEEDRIMELHSQLGNR-WSKIASLFP-GRTDNEIKNHWNT 110 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.95 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.486 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRKPCCEKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TDAEEDRIME LHSQLGNRWS KIASLFPGRT DNEIKNHWNT KIKKKMIHLG 120 LNQAAHEPIN SITSRTKPKQ ITNPNMSSTI TEKEETKEQR KDDVIIETTK PLIVSNNDEE 180 IQAENCKTLY AEEVDIGSLF AMQDNEISIS SSSFSSLYSN ISRSESSSYL AGDSISLEQW 240 DLDMTDPLVP WDLFTNLDDT LFLYDKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610539.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189564 | 0.0 | AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610539.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | A0A0D3EFK1 | 0.0 | A0A0D3EFK1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g166000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-129 | myb domain protein 40 |