PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610478.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 427aa MW: 47276.6 Da PI: 4.3869

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.3	3.6e-24	332	382	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl XP_013610478.1 332 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 382 56899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	313	402	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-20	335	382	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAGDDDPKPP GLEEDKDDGD PYYEPFSEEE LQNLMSNQNP NLMDFAFTEN PVPPPTPTPI 60 TIATSDIIET EMLNQLSLTI PNCEDTDDFL VTSFDDDIDL SWDLSDIPSE FLSDNMDSNI 120 IGEIGTNQDN GNIVGGTGTL EVSTCVFVEN GPNVETGGGS SAPITPTVSI GILVCTCCNL 180 LRTLIHSNGQ EMMRLDFHGG IGYFCHAILE IHRLDGSTEP QYQTIDLKFL SMEDVKRFIE 240 DYLAARAACG FGVVEDINAD FYQAMNANFS NNQPPMLALP PVDDVPMPQA IVPDPALNVP 300 SVPLYVGLRD EPPVSKGKKR KQTPLAIQRE RTGKLKLKDI SMHFHLPIQE AARRMSLCPT 360 VVKKICRRGG LYRWPHRKIK SLLRKISSLK SSLETTKDAQ AKARVESEIE RLEKQISEIC 420 SEALKYA

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAGDDDPKPP GLEEDKDDGD PYYEPFSEEE LQNLMSNQNP NLMDFAFTEN PVPPPTPTPI  60
TIATSDIIET EMLNQLSLTI PNCEDTDDFL VTSFDDDIDL SWDLSDIPSE FLSDNMDSNI  120
IGEIGTNQDN GNIVGGTGTL EVSTCVFVEN GPNVETGGGS SAPITPTVSI GILVCTCCNL  180
LRTLIHSNGQ EMMRLDFHGG IGYFCHAILE IHRLDGSTEP QYQTIDLKFL SMEDVKRFIE  240
DYLAARAACG FGVVEDINAD FYQAMNANFS NNQPPMLALP PVDDVPMPQA IVPDPALNVP  300
SVPLYVGLRD EPPVSKGKKR KQTPLAIQRE RTGKLKLKDI SMHFHLPIQE AARRMSLCPT  360
VVKKICRRGG LYRWPHRKIK SLLRKISSLK SSLETTKDAQ AKARVESEIE RLEKQISEIC  420
SEALKYA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610478.1	0.0	PREDICTED: uncharacterized protein LOC106317171
TrEMBL	A0A0D3EF48	0.0	A0A0D3EF48_BRAOL; Uncharacterized protein
STRING	Bo9g163480.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-08	RWP-RK domain-containing protein