PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610371.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 176aa    MW: 20568 Da    PI: 6.1281
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75.2e-1386136555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v +L +eN  L+++l + +++
  XP_013610371.1  86 RKQRRMLSNRESARRSRMRKQRHLDELWSQVISLRNENNCLIDKLIRVSDT 136
                     79****************************************999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1282146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35884147IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.1E-1286159No hitNo description
SuperFamilySSF579597.74E-1286133No hitNo description
PfamPF001705.2E-1186144IPR004827Basic-leucine zipper domain
CDDcd147022.43E-1787134No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MTPAEITGYY QYLSPEKLSI IPAEFNMLNM PTSPISSSSL NYLNDLIINN NYSLSSNGQD  60
LMMSNNSTSD EDYHQHHQSI TALDERKQRR MLSNRESARR SRMRKQRHLD ELWSQVISLR  120
NENNCLIDKL IRVSDTQDNV LKENSKLKEE VSDLRQLVSE LKPNKNNSFL REFEEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610371.11e-125PREDICTED: basic leucine zipper 43-like
TrEMBLA0A0D3E7V71e-124A0A0D3E7V7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DWY91e-124A0A3P6DWY9_BRAOL; Uncharacterized protein
STRINGBo9g075700.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.11e-67basic leucine-zipper 48